Motif HL_58385.1 Version HL_58385.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-7 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3RKF_006 | 3RKF | 0.1534 | 0 | B | Purine riboswitch | A | 59 | C | 60 | U | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH |
| 2 | HL_1Y27_003 | 1Y27 | 0.0746 | 0 | X | Purine riboswitch | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH |
| 3 | HL_4FE5_003 | 4FE5 | 0.0000 | 0 | B | Purine riboswitch | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH |
| 4 | HL_4LX6_003 | 4LX6 | 0.0982 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | ncSH |
| 5 | HL_3LA5_003 | 3LA5 | 0.1376 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH |
| 6 | HL_1Y26_003 | 1Y26 | 0.3821 | 0 | X | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCUUAAAC | 3 |
| ACCGUAAAU | 2 |
| ACUGUAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUUAAA | 3 |
| CCGUAAA | 2 |
| CUGUAAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-R-cSW-R-cSH
- Heat map statistics
- Min 0.07 | Avg 0.19 | Max 0.40
Coloring options: