Motif HL_58687.1 Version HL_58687.1 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4IOA_036 | 4IOA | 0.0000 | 1 | Pseudoknot geometry with 3' bulge (H) | X | G | 1508 | A | 1509 | A | 1510 | A | 1511 | A | 1512 | C | 1514 | cWW |
| 2 | HL_2NR0_003 | 2NR0 | 0.8101 | 0 | E | C | 45|||D | A | 45|||E | A | 45|||F | U | 45|||G | A | 45|||H | G | 46|||I | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAAUC | 1 |
| CAAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAAU | 1 |
| AAUA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_58687.1 | Only in the parent motif |
|---|---|---|---|
| HL_81555.1 Compare | HL_2NR0_003 | HL_4IOA_036 | HL_2ZJR_037 |
Children motifs
| Child motif | Common motif instances | Only in HL_58687.1 | Only in the child motif |
|---|---|---|---|
| HL_27271.1 Compare | HL_2NR0_003, HL_4IOA_036 | HL_3OWZ_002, HL_1U6B_002, HL_1S72_067, HL_2QBG_067, HL_4A1B_066, HL_3U5H_067, HL_2QBG_039, HL_4IOA_064 |
- Annotations
-
- (1)
- Pseudoknot geometry with 3' bulge (H) (1)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.81 | Avg 0.41 | Max 0.81
Coloring options: