Motif HL_81555.1 Version HL_81555.1 of this group appears in releases 0.5 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2NR0_003 | 2NR0 | 0.0000 | 0 | E | tRNA | C | 45|||D | A | 45|||E | A | 45|||F | U | 45|||G | A | 45|||H | G | 46|||I | cWW | |
| 2 | HL_2ZJR_037 | 2ZJR | 0.8010 | 1 | Pseudoknot geometry with 3' bulge (H) | X | LSU rRNA | G | 1508 | A | 1509 | A | 1510 | A | 1511 | A | 1512 | C | 1514 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUAG | 1 |
| GAAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUA | 1 |
| AAAAU | 1 |
Release history
| Release | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_81555.1 | Only in the parent motif |
|---|---|---|---|
| HL_28436.1 Compare | HL_2NR0_003, HL_2ZJR_037 | HL_3OWZ_002, HL_2ZJR_063, HL_1U6B_002, HL_1S72_067, HL_2QBG_067, HL_4A1B_066, HL_3U5H_067 |
Children motifs
| Child motif | Common motif instances | Only in HL_81555.1 | Only in the child motif |
|---|---|---|---|
| HL_58687.1 Compare | HL_2NR0_003 | HL_2ZJR_037 | HL_4IOA_036 |
- Annotations
-
- (1)
- Pseudoknot geometry with 3' bulge (H) (1)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.80 | Avg 0.40 | Max 0.80
Coloring options: