Motif HL_58853.1 Version HL_58853.1 of this group appears in releases 3.2 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4LCK_002 | 4LCK | 0.4898 | 1 | B | tRNA | C | 30 | U | 31 | G | 33 | C | 34 | C | 35 | A | 36 | A | 37 | G | 38 | cWW | ||
| 2 | HL_4R4V_005 | 4R4V | 0.0000 | 1 | Varkud satellite (VS) ribozyme helix 1 | A | VS ribozyme RNA | C | 626||||7_556 | G | 627||||7_556 | C | 629||||7_556 | G | 630||||7_556 | U | 631||||7_556 | C | 632||||7_556 | G | 633||||7_556 | G | 634||||7_556 | cWW | tSH |
| 3 | HL_4R4V_001 | 4R4V | 0.0000 | 1 | Varkud satellite (VS) ribozyme helix 1 | A | VS ribozyme RNA | C | 626 | G | 627 | C | 629 | G | 630 | U | 631 | C | 632 | G | 633 | G | 634 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUCGUCGG | 2 |
| CUUGCCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCGUCG | 2 |
| UUGCCAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Varkud satellite (VS) ribozyme helix 1 (2)
- Basepair signature
- cWW-tSH-R-R-R-R
- Heat map statistics
- Min 0.49 | Avg 0.22 | Max 0.49
Coloring options: