Motif HL_59381.1 Version HL_59381.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_184 | 8P9A | 0.2380 | 0 | AS | 5S rRNA | C | 36 | G | 37 | U | 38 | C | 39 | C | 40 | G | 41 | cWW |
| 2 | HL_8QYX_072 | 8QYX | 0.1910 | 0 | B2 | 5S rRNA | C | 36 | G | 37 | U | 38 | C | 39 | U | 40 | G | 41 | cWW |
| 3 | HL_9AXU_069 | 9AXU | 0.2071 | 0 | 3 | 5S rRNA | C | 36 | G | 37 | U | 38 | C | 39 | C | 40 | G | 41 | cWW |
| 4 | HL_8OI5_069 | 8OI5 | 0.1999 | 0 | 3 | 5S rRNA | C | 36 | G | 37 | U | 38 | U | 39 | C | 40 | G | 41 | cWW |
| 5 | HL_9E6Q_069 | 9E6Q | 0.1258 | 0 | 2 | 5S rRNA | C | 42 | A | 43 | U | 44 | C | 45 | A | 46 | G | 47 | cWW |
| 6 | HL_1MJI_002 | 1MJI | 0.0000 | 1 | D | 5S rRNA fragment | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 7 | HL_9DFE_068 | 9DFE | 0.0920 | 1 | 1B | 5S rRNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 8 | HL_8B0X_097 | 8B0X | 0.0808 | 1 | b | 5S rRNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 9 | HL_4V9F_071 | 4V9F | 0.0990 | 1 | 9 | 5S rRNA | C | 37 | A | 38 | U | 39 | C | 41 | C | 42 | G | 43 | cWW |
| 10 | HL_4WF9_066 | 4WF9 | 0.2607 | 1 | Y | 5S rRNA | C | 36 | A | 37 | U | 38 | C | 40 | C | 41 | G | 42 | cWW |
| 11 | HL_7A0S_069 | 7A0S | 0.3546 | 1 | Y | 5S rRNA | C | 40 | A | 41 | U | 42 | C | 44 | C | 45 | G | 46 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGCCG | 4 |
| CGUCCG | 2 |
| CGUCUG | 1 |
| CGUUCG | 1 |
| CAUCAG | 1 |
| CAUUCCG | 1 |
| CAUCCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGCC | 4 |
| GUCC | 2 |
| GUCU | 1 |
| GUUC | 1 |
| AUCA | 1 |
| AUUCC | 1 |
| AUCCC | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (11)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.21 | Max 0.48
Coloring options: