#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5 61-6
1 HL_8P9A_1848P9A0.23800AS 5S rRNAC36G37U38C39C40G41cWW
2 HL_8QYX_0728QYX0.19100B2 5S rRNAC36G37U38C39U40G41cWW
3 HL_9AXU_0699AXU0.207103 5S rRNAC36G37U38C39C40G41cWW
4 HL_8OI5_0698OI50.199903 5S rRNAC36G37U38U39C40G41cWW
5 HL_9E6Q_0699E6Q0.125802 5S rRNAC42A43U44C45A46G47cWW
6 HL_1MJI_0021MJI0.00001D5S rRNA fragmentC38A39U40C42C43G44cWW
7 HL_9DFE_0689DFE0.092011B 5S rRNAC38A39U40C42C43G44cWW
8 HL_8B0X_0978B0X0.08081b 5S rRNAC38A39U40C42C43G44cWW
9 HL_4V9F_0714V9F0.099019 5S rRNAC37A38U39C41C42G43cWW
10 HL_4WF9_0664WF90.26071Y 5S rRNAC36A37U38C40C41G42cWW
11 HL_7A0S_0697A0S0.35461Y 5S rRNAC40A41U42C44C45G46cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAUGCCG4
CGUCCG2
CGUCUG1
CGUUCG1
CAUCAG1
CAUUCCG1
CAUCCCG1
Non-Watson-Crick part of the motif
SequenceCounts
AUGCC4
GUCC2
GUCU1
GUUC1
AUCA1
AUUCC1
AUCCC1

Release history

Release4.0
Date2025-08-13
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (11)
  • Basepair signature
    cWW-F-F-F-F
    Heat map statistics
    Min 0.06 | Avg 0.21 | Max 0.48
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