Motif HL_61580.1 Version HL_61580.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5AJ0_075 | 5AJ0 | 0.4689 | 1 | A3 | U | 55 | G | 56 | C | 57 | G | 58 | A | 59 | A | 61 | A | 62 | cWW | csS | |
| 2 | HL_1ET4_005 | 1ET4 | 0.0000 | 1 | E | C | 119 | A | 120 | C | 121 | C | 122 | U | 123 | A | 125 | G | 126 | cWW | ||
| 3 | HL_4P5J_004 | 4P5J | 0.2687 | 1 | A | A | 69 | G | 70 | G | 71 | G | 72 | U | 73 | A | 75 | U | 76 | cWW | csS | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCGAGAA | 1 |
| CACCUCAG | 1 |
| AGGGUCAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCGAGA | 1 |
| ACCUCA | 1 |
| GGGUCA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cSS-cSH
- Heat map statistics
- Min 0.27 | Avg 0.28 | Max 0.51
Coloring options: