Motif HL_61854.1 Version HL_61854.1 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3IVK_002 | 3IVK | 0.7055 | 0 | M | class I ligase product | C | 40 | G | 41 | A | 42 | A | 43 | G | 44 | cWW | |
| 2 | HL_3HHN_007 | 3HHN | 0.5972 | 0 | E | Class I ligase ribozyme, self-ligation product | C | 40 | G | 41 | A | 42 | A | 43 | G | 44 | cWW | |
| 3 | HL_5MGA_001 | 5MGA | 0.0000 | 1 | B | RNA (40-MER) | C | -11 | U | -10 | G | -9 | U | -8 | G | -6 | cWW | |
| 4 | HL_5XH7_001 | 5XH7 | 0.3798 | 1 | B | crRNA | C | -11 | U | -10 | C | -9 | U | -8 | G | -6 | cWW | |
| 5 | HL_5KK5_001 | 5KK5 | 0.5834 | 1 | B | RNA (40-MER) | C | -11 | U | -10 | C | -9 | U | -8 | G | -6 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAG | 2 |
| CUCUUG | 2 |
| CUGUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA | 2 |
| UCUU | 2 |
| UGUU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: