Motif HL_61996.2 Version HL_61996.2 of this group appears in releases 3.95 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8CRE_049 | 8CRE | 0.3339 | 3 | 1 | LSU rRNA | G | 2347 | G | 2348 | G | 2349 | G | 2353 | G | 2354 | G | 2355 | C | 2356 | cWW | tWH | |
| 2 | HL_8P9A_162 | 8P9A | 0.3301 | 3 | AR | LSU rRNA | G | 2369 | G | 2370 | G | 2371 | G | 2375 | G | 2376 | G | 2377 | C | 2378 | cWW | tWH | |
| 3 | HL_4V9F_052 | 4V9F | 0.1290 | 3 | 0 | LSU rRNA | G | 2068 | U | 2069 | G | 2070 | A | 2074 | G | 2075 | U | 2076 | C | 2077 | cWW | tWH | |
| 4 | HL_4WF9_047 | 4WF9 | 0.0985 | 3 | X | LSU rRNA | G | 2054 | U | 2055 | G | 2056 | A | 2060 | U | 2061 | G | 2062 | C | 2063 | cWW | tWH | |
| 5 | HL_5J7L_183 | 5J7L | 0.0000 | 3 | DA | LSU rRNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | U | 2034 | G | 2035 | C | 2036 | cWW | tWH | |
| 6 | HL_7A0S_049 | 7A0S | 0.1334 | 3 | X | LSU rRNA | G | 2010 | U | 2011 | A | 2012 | A | 2016 | U | 2017 | G | 2018 | C | 2019 | cWW | tWH | |
| 7 | HL_9DFE_048 | 9DFE | 0.1260 | 3 | 1A | LSU rRNA | G | 2027 | U | 2028 | G | 2029 | A | 2033 | U | 2034 | G | 2035 | C | 2036 | cWW | tWH | |
| 8 | HL_5E7K_220 | 5E7K | 0.5686 | 2 | T-loop with 2 stacked bulged bases (H) | 3L | tRNA | G | 53 | 5MU | 54 | PSU | 55 | A | 58 | A | 59 | U | 60 | C | 61 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAACGGGC | 2 |
| GUGAAGAUGC | 2 |
| GUGCGGAGUC | 1 |
| GUGAGAUGC | 1 |
| GUAAAGAUGC | 1 |
| GCGAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAACGGG | 2 |
| UGAAGAUG | 2 |
| UGCGGAGU | 1 |
| UG(6MZ)AGAUG | 1 |
| UAAAGAUG | 1 |
| (5MU)(PSU)CGAAU | 1 |
- Annotations
-
- (7)
- T-loop with 2 stacked bulged bases (H) (1)
- Basepair signature
- cWW-tWH-F-F-F
- Heat map statistics
- Min 0.05 | Avg 0.28 | Max 0.62
Coloring options: