Motif HL_64328.2 Version HL_64328.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V90_032 | 4V90 | 1.0079 | 3 | AV | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | ncWS | ||
| 2 | HL_4V9K_033 | 4V9K | 0.8465 | 4 | AW | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | |||
| 3 | HL_3A2K_001 | 3A2K | 0.7098 | 4 | C | bacterial tRNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 22 | G | 23 | cWW | ncWS | ||
| 4 | HL_4YCO_001 | 4YCO | 0.3778 | 3 | D | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | cWS | cSH | |
| 5 | HL_2AZX_007 | 2AZX | 0.0000 | 2 | D | 72-MER | C | 513||||6_555 | A | 514||||6_555 | A | 515||||6_555 | G | 519||||6_555 | U | 520||||6_555 | A | 521||||6_555 | G | 522||||6_555 | cWW | cWS | ||
| 6 | HL_2AZX_004 | 2AZX | 0.0000 | 2 | D | 72-MER | C | 513 | A | 514 | A | 515 | G | 519 | U | 520 | A | 521 | G | 522 | cWW | cWS | ||
| 7 | HL_4WJ4_004 | 4WJ4 | 0.4529 | 3 | B | tRNA | C | 13||||5_455 | A | 14||||5_455 | G | 15||||5_455 | G | 19||||5_455 | U | 20||||5_455 | A | 21||||5_455 | G | 22||||5_455 | cWW | ncSW | ||
| 8 | HL_4WJ4_001 | 4WJ4 | 0.4529 | 3 | B | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUCGGUAG | 3 |
| CAGUUGGUUAG | 2 |
| CAAUGGUAG | 2 |
| CAGCCGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUCGGUA | 3 |
| AGUUGGUUA | 2 |
| AAUGGUA | 2 |
| AGCCGGUA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWS-R-R-R
- Heat map statistics
- Min 0.38 | Avg 0.58 | Max 1.07
Coloring options: