Hairpin Loop Motif Atlas Release 4.2

#	Motif	Core Nts	Instances
1	HL_34789.3 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent GNRA (268) GNRA variation (13) GNRA with GA tSW pair (2) GNRA related (2)	6	397
2	HL_33597.3 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: Updated, 1 parent T-loop with 2 stacked bulged bases (114)	9	135
3	HL_61337.3 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 1 parent UNCG (46) UNCG variation (2)	5	62
4	HL_90436.3 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent Mini UNCG (30) Mini UNCG with extended bulge (2)	3	46
5	HL_81376.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent tRNA anticodon loop (32) Anticodon loop related (4)	9	43
6	HL_52651.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (19)	8	29
7	HL_64036.2 View exemplar Basepair signature: cWW-tSW-F History status: Exact match Fab BL3-6 binding hairpin with tSW (22) Other HL (3)	5	27
8	HL_13999.3 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Updated, 1 parent T-loop with 2 bulged bases not stacked (7) T-loop with 2 stacked bulged bases (6) T-loop with 1 bulged base (3) T-loop related (1)	7	23
9	HL_89167.2 View exemplar Basepair signature: cWW-F-F History status: Exact match tRNA anticodon loop with synthetase (1) tRNA D-loop (1)	4	22
10	HL_48677.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match GNRA (1)	6	22
11	HL_36992.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match U1 small nuclear ribonucleoprotein A binding hairpin (20)	10	22
12	HL_75660.7 View exemplar Basepair signature: cWW-F History status: Exact match	3	22
13	HL_63894.2 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Exact match T-loop related (6) tRNA anticodon loop with synthetase (2) Other HL (1) T-loop (1)	7	19
14	HL_11974.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match tRNA anticodon loop (4)	8	17
15	HL_49081.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Pseudoknot geometry with 3' bulge (11)	5	17
16	HL_12626.2 View exemplar Basepair signature: cWW-F History status: Exact match Mini UNCG (13) Mini UNCG related (2)	3	17
17	HL_27670.4 View exemplar Basepair signature: cWW-tWH-F-F History status: Updated, 1 parent T-loop with unstacked turn (10)	6	16
18	HL_30680.5 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match Pseudoknot geometry (12)	7	16
19	HL_98423.3 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: Updated, 2 parents GNRA wlth tandem sheared (9) GNRA wlth extra near cWW (2)	8	15
20	HL_87268.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent GNRA with extra cWW (5) GNRA related (2) T-loop related (1) tRNA anticodon loop (1) GNRA with extra near cWW (1)	8	15
21	HL_09122.1 View exemplar Basepair signature: cWW-F-F-cSW-cSH-F History status: Exact match	9	15
22	HL_76371.2 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	7	14
23	HL_51020.2 View exemplar Basepair signature: cWW-cSW-F History status: Exact match UNCG variation (5)	5	14
24	HL_77449.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match	8	14
25	HL_12125.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match Pseudoknot geometry (4) Ribsomal LSU H95 (3)	6	14
26	HL_59381.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	13
27	HL_67772.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match T-loop related (5) T-loop with 1 bulged base (2) Other HL (1)	7	13
28	HL_20490.1 View exemplar Basepair signature: cWW-cWS-F History status: Exact match tRNA D-loop (12) Other HL (1)	5	13
29	HL_92598.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match GNRA related (2) tRNA anticodon loop (1)	7	13
30	HL_80709.5 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	12
31	HL_38491.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	12
32	HL_00911.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match Pseudoknot geometry (4)	7	12
33	HL_02042.1 View exemplar Basepair signature: cWW-tSH-tHH-tWW-F-F-F History status: Exact match	11	12
34	HL_28592.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	12
35	HL_37889.1 View exemplar Basepair signature: cWW-cSW-F-F-F-F History status: Exact match	8	12
36	HL_61418.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match T-loop related (4) T-loop with 1 bulged base (1)	8	12
37	HL_32346.6 View exemplar Basepair signature: cWW-F History status: Exact match	3	11
38	HL_35704.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	11
39	HL_46333.1 View exemplar Basepair signature: cWW-R-cSH History status: Exact match Purine riboswitch (8) Pseudoknot geometry (2)	7	11
40	HL_36265.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	11
41	HL_23048.1 View exemplar Basepair signature: cWW-cWS-F-cSH History status: Exact match tRNA D-loop (3)	7	11
42	HL_46665.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match GNRA variation (5)	7	11
43	HL_50204.1 View exemplar Basepair signature: cWW-cWS-tSW-F-F History status: Exact match	7	11
44	HL_53269.2 View exemplar Basepair signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW History status: Exact match	13	10
45	HL_27530.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	10
46	HL_63054.2 View exemplar Basepair signature: cWW-cWS-F-F-F-F History status: Exact match tRNA D-loop (7)	8	10
47	HL_78372.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Exact match	7	10
48	HL_47171.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	10
49	HL_86621.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA anticodon loop (3) Anticodon loop related (2) GNRA-like with tWH (1)	7	9
50	HL_86834.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	9
51	HL_19413.2 View exemplar Basepair signature: cWW-cSW-F History status: Exact match	5	9
52	HL_52011.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: Exact match	9	9
53	HL_37569.3 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent GNRA related (2)	5	9
54	HL_87681.1 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	7	9
55	HL_17803.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot with intercalation (3)	10	9
56	HL_59138.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	8
57	HL_02452.1 View exemplar Basepair signature: cWW-F-cWH-F-F-F-F History status: Exact match	9	8
58	HL_78347.5 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	8
59	HL_31089.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	8
60	HL_13184.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	8
61	HL_69752.4 View exemplar Basepair signature: cWW-F History status: Exact match UNCG related (1)	3	7
62	HL_97725.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match Pseudoknot geometry (2) tRNA anticodon loop (1)	6	7
63	HL_18470.2 View exemplar Basepair signature: cWW-cWS-tSH-cWS-F History status: Exact match tRNA D-loop (2)	8	7
64	HL_35677.5 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match Pseudoknot with intercalation (3)	9	7
65	HL_97756.3 View exemplar Basepair signature: cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F History status: Exact match	14	7
66	HL_87306.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent Anticodon loop related (2) tRNA anticodon loop (1) Pseudoknot geometry (1) GNRA with extra near cWW (1)	8	7
67	HL_18141.3 View exemplar Basepair signature: cWW-F-cSH History status: Updated, 1 parent tRNA D-loop (4)	5	6
68	HL_14063.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	6
69	HL_93535.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match GNRA (1)	6	6
70	HL_56131.2 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	6
71	HL_51853.2 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: Exact match	9	6
72	HL_50006.5 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	6
73	HL_17440.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Pseudoknot (2)	8	6
74	HL_97696.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	6
75	HL_92697.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	5
76	HL_32279.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	5
77	HL_45175.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match tRNA D-loop (5)	6	5
78	HL_55043.2 View exemplar Basepair signature: cWW-tSH-cWS-F History status: Exact match	7	5
79	HL_92935.1 View exemplar Basepair signature: cWW-tSW-F History status: Exact match	5	5
80	HL_50951.1 View exemplar Basepair signature: cWW-F-F-tWH-F-F-F History status: Exact match	9	5
81	HL_89199.3 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG (3)	5	5
82	HL_86432.1 View exemplar Basepair signature: cWW-tWH-tWH-F-F-F History status: Exact match	9	5
83	HL_22758.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (1)	8	5
84	HL_73535.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F History status: Exact match	11	5
85	HL_42293.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	5
86	HL_68749.1 View exemplar Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F History status: Exact match	13	5
87	HL_20174.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	5
88	HL_99456.1 View exemplar Basepair signature: cWW-tSS-F-F-F History status: Exact match	7	5
89	HL_97521.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	5
90	HL_76195.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	8	5
91	HL_20751.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	13	4
92	HL_10874.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	4
93	HL_14856.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	4
94	HL_07480.3 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	7	4
95	HL_81314.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	4
96	HL_15296.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	4
97	HL_01182.1 View exemplar Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F History status: Exact match	14	4
98	HL_82185.1 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F-F History status: Exact match	10	4
99	HL_12111.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG (1)	5	4
100	HL_82710.3 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	4
101	HL_98864.3 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Exact match T-loop with unstacked turn (4)	10	4
102	HL_57684.1 View exemplar Basepair signature: cWW-F-F History status: Exact match tRNA D-loop (3)	4	4
103	HL_34245.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Exact match tRNA anticodon loop (1) Anticodon loop related (1)	9	4
104	HL_97067.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Exact match	7	4
105	HL_64374.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	4
106	HL_44506.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	4
107	HL_35113.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	3
108	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	12	3
109	HL_61768.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	3
110	HL_07380.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match GNRA (1)	6	3
111	HL_76590.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	3
112	HL_67667.4 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	3
113	HL_16651.1 View exemplar Basepair signature: cWW History status: Exact match	2	3
114	HL_08550.2 View exemplar Basepair signature: cWW-F-F-F-cSH History status: Exact match	7	3
115	HL_68571.1 View exemplar Basepair signature: cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	17	3
116	HL_94376.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (2)	11	3
117	HL_36488.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	3
118	HL_40612.1 View exemplar Basepair signature: cWW History status: Exact match	2	3
119	HL_68572.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	3
120	HL_91503.8 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	3
121	HL_99373.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F-F-F-F History status: Exact match	11	3
122	HL_02817.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	3
123	HL_68791.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	3
124	HL_37671.1 View exemplar Basepair signature: cWW-tWW-F-F-F History status: Exact match Pseudoknot (3)	7	3
125	HL_50525.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	3
126	HL_88364.4 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	15	3
127	HL_04642.3 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (3)	7	3
128	HL_31962.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match	8	3
129	HL_65256.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	3
130	HL_69186.2 View exemplar Basepair signature: cWW-cWW-F-F History status: Exact match tRNA anticodon loop with synthetase (3)	6	3
131	HL_50765.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	3
132	HL_32152.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Anticodon loop related (1)	9	2
133	HL_44740.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	7	2
134	HL_10611.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
135	HL_48408.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	2
136	HL_00557.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	7	2
137	HL_81312.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	2
138	HL_70052.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	11	2
139	HL_00824.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Pseudoknot (1)	8	2
140	HL_27510.1 View exemplar Basepair signature: cWW-F History status: New id, no parents	3	2
141	HL_55305.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
142	HL_65821.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	2
143	HL_93383.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	9	2
144	HL_49073.1 View exemplar Basepair signature: cWW-cWS History status: Exact match UNCG related (1)	5	2
145	HL_70658.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	12	2
146	HL_39243.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
147	HL_89498.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	14	2
148	HL_18565.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	8	2
149	HL_32704.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (2)	15	2
150	HL_71391.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
151	HL_51121.1 View exemplar Basepair signature: cWW-F-F-F-F-cSH-F-F-F History status: Exact match	11	2
152	HL_32871.1 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Exact match	9	2
153	HL_93658.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Exact match T-loop with 3 stacked bulged bases (1)	10	2
154	HL_98821.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	11	2
155	HL_39665.1 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	14	2
156	HL_63151.1 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match	6	2
157	HL_78283.1 View exemplar Basepair signature: cWW-cWS-cWW-cWW-cWS History status: Exact match	8	2
158	HL_33487.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	2
159	HL_56676.1 View exemplar Basepair signature: cWW-F-F History status: Exact match UNCG variation (1)	6	2
160	HL_49556.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-F-F-F History status: Exact match tRNA D-loop (2)	11	2
161	HL_60358.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	2
162	HL_29561.1 View exemplar Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F History status: Exact match	16	2
163	HL_91228.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Exact match	9	2
164	HL_94488.1 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F History status: Exact match Pseudoknot geometry with G-bulge (1)	14	2
165	HL_60499.1 View exemplar Basepair signature: cWW-cWW-cWH-F-F-F-F-F History status: Exact match	11	2
166	HL_99324.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	17	2
167	HL_02621.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
168	HL_12758.3 View exemplar Basepair signature: cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH History status: Exact match G-quadruplex (2)	22	2
169	HL_37101.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match tRNA D-loop (2)	7	2
170	HL_60848.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F History status: Exact match	12	2
171	HL_74379.5 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Exact match	9	2
172	HL_79745.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
173	HL_09841.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
174	HL_57863.1 View exemplar Basepair signature: cWW-F-F-cWH-cWH-F History status: Exact match G-quadruplex fragment (2)	9	2
175	HL_84585.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	6	2
176	HL_24179.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: Exact match	7	2
177	HL_10456.1 View exemplar Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F History status: Exact match	17	2
178	HL_47732.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	2
179	HL_57992.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	2
180	HL_69139.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	2
181	HL_53014.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	2
182	HL_20535.3 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	6	2
183	HL_34964.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	9	2
184	HL_86012.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match T-loop with unstacked turn (2)	8	2
185	HL_26027.1 View exemplar Basepair signature: cWW-F History status: Exact match Mini UNCG related (1)	4	2
186	HL_88397.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (2)	7	2
187	HL_07074.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
188	HL_65266.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
189	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	13	1
190	HL_97714.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	1
191	HL_26934.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
192	HL_38046.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
193	HL_50851.1 View exemplar Basepair signature: cWW-cWH-cWH-cWH-cWH-F History status: Exact match G-quadruplex fragment (1)	9	1
194	HL_18423.1 View exemplar Basepair signature: cWW-tSH-tHS-F History status: Exact match	7	1
195	HL_65313.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
196	HL_20781.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
197	HL_35354.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	21	1
198	HL_86417.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
199	HL_61907.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
200	HL_45232.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
201	HL_11542.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	1
202	HL_21400.1 View exemplar Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH History status: Exact match G-quadruplex (1)	18	1
203	HL_59330.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
204	HL_62737.1 View exemplar Basepair signature: cWW-F-F-cSH History status: Exact match Other HL (1)	6	1
205	HL_76842.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (1)	7	1
206	HL_07903.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
207	HL_45584.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-tHH-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	50	1
208	HL_55605.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F History status: Exact match	12	1
209	HL_16270.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
210	HL_39567.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
211	HL_08179.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F History status: Exact match	11	1
212	HL_18978.1 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F History status: Exact match	9	1
213	HL_23010.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
214	HL_49514.1 View exemplar Basepair signature: cWW-tHH-F-F-F History status: Exact match	7	1
215	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	20	1
216	HL_91218.1 View exemplar Basepair signature: cWW-cSH-F History status: New id, no parents	5	1
217	HL_19136.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	7	1
218	HL_46486.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
219	HL_73580.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: Exact match	8	1
220	HL_87266.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	10	1
221	HL_16725.1 View exemplar Basepair signature: cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH-F History status: Exact match	23	1
222	HL_51858.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	8	1
223	HL_63355.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
224	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	11	1
225	HL_56954.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
226	HL_84331.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
227	HL_23509.1 View exemplar Basepair signature: cSH-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
228	HL_74027.1 View exemplar Basepair signature: cWW History status: Exact match	17	1
229	HL_16991.1 View exemplar Basepair signature: cWW-cWH-cWH-F-cWH-F History status: Exact match G-quadruplex fragment (1)	8	1
230	HL_29762.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
231	HL_19930.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
232	HL_33983.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
233	HL_46984.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	8	1
234	HL_84433.1 View exemplar Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F History status: Exact match	14	1
235	HL_94980.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
236	HL_23600.1 View exemplar Basepair signature: cWW-F-cWH-F History status: Exact match	6	1
237	HL_42985.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
238	HL_52616.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	17	1
239	HL_91641.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F History status: Exact match	16	1
240	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	12	1
241	HL_50318.1 View exemplar Basepair signature: cWW-cSH-F-F History status: Exact match	6	1
242	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	1
243	HL_04641.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
244	HL_17785.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	1
245	HL_42986.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	19	1
246	HL_80008.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	1
247	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	13	1
248	HL_85461.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	15	1
249	HL_24792.1 View exemplar Basepair signature: cWW-cWS-F-F-F History status: Exact match	6	1
250	HL_76094.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match	5	1
251	HL_80411.1 View exemplar Basepair signature: cWW-F-cSH-F-F-F-F History status: Exact match tRNA D-loop (1)	9	1
252	HL_10466.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
253	HL_47854.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
254	HL_58224.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
255	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	19	1

Coloring options:
Nucleotide numbers

Exact match 238; Updated, 1 parent 12; New id, 1 parent 1; New id, no parents 2; New id, 2 parents 1; Updated, 2 parents 1;

Hairpin Loop Motif Atlas Release 4.2 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 4.2

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