Motif HL_64438.1 Version HL_64438.1 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 1-18 | 1-19 | 2-3 | 2-18 | 3-14 | 3-17 | 4-11 | 5-9 | 5-10 | 12-14 | 15-16 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4CUV_076 | 4CUV | 0.0000 | 2 | 4 | 5.8S RRNA | U | 69 | G | 70 | A | 71 | A | 72 | U | 73 | U | 74 | G | 75 | C | 76 | A | 77 | G | 78 | A | 79 | A | 80 | U | 81 | U | 82 | C | 83 | G | 85 | G | 87 | A | 88 | A | 89 | ntSH | cWW | cSH | ntSH | tSS | tHS | ncWW | ntSH | ncWW | ncSS | ||
| 2 | HL_3U5H_075 | 3U5H | 0.3047 | 2 | 8 | 5.8S rRNA | U | 69 | G | 70 | A | 71 | A | 72 | U | 73 | U | 74 | G | 75 | C | 76 | A | 77 | G | 78 | A | 79 | A | 80 | U | 81 | U | 82 | C | 83 | G | 85 | G | 87 | A | 88 | A | 89 | cWW | tSH | ntWW | tHS | ncWW | ntSH | ncWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAUUGCAGAAUUCCGUGAA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAUUGCAGAAUUCCGUGA | 2 |
Release history
| Release | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|
| Date | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_64438.1 | Only in the parent motif |
|---|---|---|---|
| HL_90102.1 Compare | HL_3U5H_075 | HL_4CUV_076 |
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tSH-tHS-R-R-R-R-R-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.30 | Avg 0.15 | Max 0.30
Coloring options: