Motif HL_64543.3 Version HL_64543.3 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4BPP_026 | 4BPP | 0.3757 | 1 | A | 18S RRNA | G | 1160 | A | 1161 | C | 1162 | U | 1163 | C | 1164 | A | 1165 | A | 1166 | C | 1167 | C | 1169 | cWW | |
| 2 | HL_4CUX_027 | 4CUX | 0.3208 | 1 | 2 | 18S RRNA | G | 1188 | A | 1189 | C | 1190 | U | 1191 | C | 1192 | A | 1193 | A | 1194 | C | 1195 | C | 1197 | ncWW | |
| 3 | HL_3U5F_027 | 3U5F | 0.1857 | 1 | 6 | 18S rRNA | G | 1188 | A | 1189 | C | 1190 | U | 1191 | C | 1192 | A | 1193 | A | 1194 | C | 1195 | C | 1197 | cWW | |
| 4 | HL_1FJG_021 | 1FJG | 0.0000 | 1 | A | SSU rRNA | G | 963 | A | 964 | A | 965 | G | 966 | C | 967 | A | 968 | A | 969 | C | 970 | C | 972 | cWW | |
| 5 | HL_2AW7_021 | 2AW7 | 0.1732 | 1 | A | 16S ribosomal RNA | G | 963 | A | 964 | U | 965 | G | 966 | C | 967 | A | 968 | A | 969 | C | 970 | C | 972 | cWW | ncsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACUCAACAC | 3 |
| GAAGCAACGC | 1 |
| GAUGCAACGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUCAACA | 3 |
| AAGCAACG | 1 |
| AUGCAACG | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_64543.3 | Only in the parent motif |
|---|---|---|---|
| HL_64543.2 Compare | HL_1FJG_021, HL_2AW7_021, HL_4BPP_026, HL_3U5F_027 | HL_4CUX_027 |
Children motifs
| Child motif | Common motif instances | Only in HL_64543.3 | Only in the child motif |
|---|---|---|---|
| HL_64543.4 Compare | HL_4CUX_027, HL_1FJG_021, HL_2AW7_021, HL_4BPP_026, HL_3U5F_027 | HL_3J7A_023 |
- Annotations
-
- (5)
- Basepair signature
- cWW-R-cSS-R-R-R-R
- Heat map statistics
- Min 0.17 | Avg 0.25 | Max 0.42
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