Motif HL_64543.2 Version HL_64543.2 of this group appears in releases 1.5 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4BPP_026 | 4BPP | 0.3757 | 1 | A | G | 1160 | A | 1161 | C | 1162 | U | 1163 | C | 1164 | A | 1165 | A | 1166 | C | 1167 | C | 1169 | cWW | |
| 2 | HL_3U5F_027 | 3U5F | 0.1857 | 1 | 6 | G | 1188 | A | 1189 | C | 1190 | U | 1191 | C | 1192 | A | 1193 | A | 1194 | C | 1195 | C | 1197 | cWW | |
| 3 | HL_1FJG_021 | 1FJG | 0.0000 | 1 | A | G | 963 | A | 964 | A | 965 | G | 966 | C | 967 | A | 968 | A | 969 | C | 970 | C | 972 | cWW | |
| 4 | HL_2AW7_021 | 2AW7 | 0.1732 | 1 | A | G | 963 | A | 964 | U | 965 | G | 966 | C | 967 | A | 968 | A | 969 | C | 970 | C | 972 | cWW | ncsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACUCAACAC | 2 |
| GAAGCAACGC | 1 |
| GAUGCAACGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUCAACA | 2 |
| AAGCAACG | 1 |
| AUGCAACG | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_64543.2 | Only in the parent motif |
|---|---|---|---|
| HL_64543.1 Compare | HL_1FJG_021, HL_2AW7_021, HL_3U5F_027 | HL_4BPP_026 | HL_2XZM_025 |
Children motifs
| Child motif | Common motif instances | Only in HL_64543.2 | Only in the child motif |
|---|---|---|---|
| HL_64543.3 Compare | HL_1FJG_021, HL_2AW7_021, HL_4BPP_026, HL_3U5F_027 | HL_4CUX_027 |
- Annotations
-
- (4)
- Basepair signature
- cWW-R-cSS-R-R-R-R
- Heat map statistics
- Min 0.17 | Avg 0.23 | Max 0.42
Coloring options: