Motif HL_65110.1 Version HL_65110.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4PQV_003 | 4PQV | 0.0000 | 1 | A | Flavivirus 3' UTR stem loop IV | G | 57 | G | 58 | A | 59 | G | 61 | A | 62 | C | 63 | cWW | tSH |
| 2 | HL_1F1T_001 | 1F1T | 0.6518 | 0 | A | MALACHITE GREEN APTAMER RNA | C | 14 | G | 15 | A | 16 | G | 17 | A | 18 | G | 19 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGGAC | 1 |
| CGAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGGA | 1 |
| GAGA | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-F-F
- Heat map statistics
- Min 0.65 | Avg 0.33 | Max 0.65
Coloring options: