Motif HL_65249.2 Version HL_65249.2 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1Y0Q_005 | 1Y0Q | 0.8738 | 0 | A | Group I catalytic intron | C | 146 | A | 147 | A | 148 | G | 149 | U | 150 | G | 151 | cWW | ncsS |
| 2 | HL_4CUX_012 | 4CUX | 0.0000 | 1 | 2 | 18S RRNA | U | 450 | A | 451 | U | 453 | U | 454 | C | 455 | A | 456 | cWW | |
| 3 | HL_4A1B_004 | 4A1B | 0.6062 | 1 | 1 | 26S RRNA | G | 130 | G | 131 | C | 133 | A | 134 | A | 135 | C | 136 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGUG | 1 |
| UAAUUCA | 1 |
| GGUCAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGU | 1 |
| AAUUC | 1 |
| GUCAA | 1 |
Release history
| Release | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|
| Date | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_65249.2 | Only in the parent motif |
|---|---|---|---|
| HL_65249.1 Compare | HL_1Y0Q_005, HL_4A1B_004 | HL_4CUX_012 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.61 | Avg 0.55 | Max 0.97
Coloring options: