Hairpin Loop Motif Atlas Release 4.1

#	Motif	Core Nts	Instances
1	HL_34789.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent GNRA (269) GNRA variation (13) GNRA with GA tSW pair (2) GNRA related (2)	6	397
2	HL_33597.2 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: Updated, 1 parent T-loop with 2 stacked bulged bases (114)	9	135
3	HL_61337.2 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 1 parent UNCG (46) UNCG variation (2)	5	60
4	HL_90436.2 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent Mini UNCG (31) Mini UNCG with extended bulge (2)	3	46
5	HL_81376.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent tRNA anticodon loop (32) Anticodon loop related (4)	9	42
6	HL_52651.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (19)	8	29
7	HL_64036.2 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 1 parent Fab BL3-6 binding hairpin with tSW (22) Other HL (3)	5	27
8	HL_36992.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent U1 small nuclear ribonucleoprotein A binding hairpin (20)	10	22
9	HL_75660.7 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent	3	22
10	HL_89167.2 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent tRNA anticodon loop with synthetase (1) tRNA D-loop (1)	4	22
11	HL_13999.2 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Updated, 1 parent T-loop with 2 bulged bases not stacked (7) T-loop with 2 stacked bulged bases (6) T-loop with 1 bulged base (3) T-loop related (1)	7	22
12	HL_48677.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match GNRA (1)	6	22
13	HL_63894.2 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Updated, 1 parent T-loop related (6) tRNA anticodon loop with synthetase (2) Other HL (1) T-loop (1)	7	19
14	HL_12626.2 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent Mini UNCG (13) Mini UNCG related (2)	3	17
15	HL_49081.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Pseudoknot geometry with 3' bulge (11)	5	17
16	HL_11974.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent tRNA anticodon loop (4)	8	17
17	HL_30680.5 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (12)	7	16
18	HL_87268.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents GNRA with extra cWW (5) GNRA related (2) T-loop related (1) tRNA anticodon loop (1) GNRA with extra near cWW (1)	8	16
19	HL_09122.1 View exemplar Basepair signature: cWW-F-F-cSW-cSH-F History status: New id, 1 parent	9	15
20	HL_27670.3 View exemplar Basepair signature: cWW-tWH-F-F History status: Exact match T-loop with unstacked turn (10)	6	15
21	HL_12125.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (4) Ribsomal LSU H95 (3)	6	14
22	HL_76371.2 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Updated, 1 parent	7	14
23	HL_51020.2 View exemplar Basepair signature: cWW-cSW-F History status: Updated, 2 parents UNCG variation (5)	5	14
24	HL_77449.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match	8	14
25	HL_92598.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents GNRA related (2) tRNA anticodon loop (1)	7	13
26	HL_20490.1 View exemplar Basepair signature: cWW-cWS-F History status: New id, 2 parents tRNA D-loop (12) Other HL (1)	5	13
27	HL_67772.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match T-loop related (5) T-loop with 1 bulged base (2) Other HL (1)	7	13
28	HL_59381.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 2 parents	6	13
29	HL_02042.1 View exemplar Basepair signature: cWW-tSH-tHH-tWW-F-F-F History status: Exact match	11	12
30	HL_80709.5 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	12
31	HL_37889.1 View exemplar Basepair signature: cWW-cSW-F-F-F-F History status: Exact match	8	12
32	HL_61418.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 2 parents T-loop related (4) T-loop with 1 bulged base (1)	8	12
33	HL_98423.2 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: Updated, 2 parents GNRA wlth tandem sheared (6) GNRA wlth extra near cWW (2)	8	12
34	HL_38491.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent	10	12
35	HL_00911.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (4)	7	12
36	HL_46665.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent GNRA variation (5)	7	11
37	HL_23048.1 View exemplar Basepair signature: cWW-cWS-F-cSH History status: New id, 1 parent tRNA D-loop (3)	7	11
38	HL_50204.1 View exemplar Basepair signature: cWW-cWS-tSW-F-F History status: Exact match	7	11
39	HL_37569.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 2 parents GNRA related (2)	5	11
40	HL_32346.6 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent	3	11
41	HL_35704.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: New id, 1 parent	10	11
42	HL_46333.1 View exemplar Basepair signature: cWW-R-cSH History status: New id, 1 parent Purine riboswitch (8) Pseudoknot geometry (2)	7	11
43	HL_36265.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	11
44	HL_28592.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	11
45	HL_78372.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Exact match	7	10
46	HL_47171.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	10
47	HL_53269.2 View exemplar Basepair signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW History status: Updated, 1 parent	13	10
48	HL_27530.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	10
49	HL_63054.2 View exemplar Basepair signature: cWW-cWS-F-F-F-F History status: Updated, 1 parent tRNA D-loop (7)	8	10
50	HL_87306.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents GNRA wlth tandem sheared (3) Anticodon loop related (2) tRNA anticodon loop (1) Pseudoknot geometry (1) GNRA with extra near cWW (1)	8	9
51	HL_52011.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: Exact match	9	9
52	HL_19413.2 View exemplar Basepair signature: cWW-cSW-F History status: Updated, 1 parent	5	9
53	HL_87681.1 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	7	9
54	HL_17803.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot with intercalation (3)	10	9
55	HL_86621.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents tRNA anticodon loop (3) Anticodon loop related (2) GNRA-like with tWH (1)	7	9
56	HL_86834.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	6	9
57	HL_02452.1 View exemplar Basepair signature: cWW-F-cWH-F-F-F-F History status: Exact match	9	8
58	HL_31089.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	8
59	HL_13184.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	8
60	HL_59138.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	8
61	HL_78347.5 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	8
62	HL_69752.4 View exemplar Basepair signature: cWW-F History status: Updated, 2 parents UNCG related (1)	3	7
63	HL_97725.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents Pseudoknot geometry (2) tRNA anticodon loop (1)	6	7
64	HL_97756.3 View exemplar Basepair signature: cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F History status: Exact match	14	7
65	HL_18141.2 View exemplar Basepair signature: cWW-F-cSH History status: Updated, 1 parent tRNA D-loop (4) Other HL (1)	5	7
66	HL_35677.5 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot with intercalation (3)	9	7
67	HL_18470.2 View exemplar Basepair signature: cWW-cWS-tSH-cWS-F History status: Updated, 1 parent tRNA D-loop (2)	8	7
68	HL_50006.5 View exemplar Basepair signature: cWW-F-F History status: Updated, 2 parents	4	6
69	HL_97696.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents	4	6
70	HL_17440.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent Pseudoknot (2)	8	6
71	HL_93535.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match GNRA (1)	6	6
72	HL_14063.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Updated, 1 parent	11	6
73	HL_56131.2 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	6
74	HL_51853.2 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: Updated, 1 parent	9	6
75	HL_68749.1 View exemplar Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F History status: Exact match	13	5
76	HL_99456.1 View exemplar Basepair signature: cWW-tSS-F-F-F History status: New id, 1 parent	7	5
77	HL_42293.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	5
78	HL_97521.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	5
79	HL_92697.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	5
80	HL_20174.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	5
81	HL_76195.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: New id, 2 parents	8	5
82	HL_92935.1 View exemplar Basepair signature: cWW-tSW-F History status: Exact match	5	5
83	HL_89199.3 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG (3)	5	5
84	HL_32279.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: New id, 1 parent	10	5
85	HL_45175.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match tRNA D-loop (5)	6	5
86	HL_55043.2 View exemplar Basepair signature: cWW-tSH-cWS-F History status: Updated, 1 parent	7	5
87	HL_86432.1 View exemplar Basepair signature: cWW-tWH-tWH-F-F-F History status: Exact match	9	5
88	HL_50951.1 View exemplar Basepair signature: cWW-F-F-tWH-F-F-F History status: Exact match	9	5
89	HL_73535.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F History status: New id, 1 parent	11	5
90	HL_22758.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent Pseudoknot geometry (1)	8	5
91	HL_97067.1 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Exact match	7	4
92	HL_57684.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents tRNA D-loop (3)	4	4
93	HL_34245.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Updated, 1 parent tRNA anticodon loop (1) Anticodon loop related (1)	9	4
94	HL_44506.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 2 parents	5	4
95	HL_81314.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents	7	4
96	HL_20751.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	13	4
97	HL_10874.1 View exemplar Basepair signature: cWW-cWW History status: New id, 1 parent	4	4
98	HL_14856.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: New id, 1 parent	10	4
99	HL_07480.3 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	7	4
100	HL_82185.1 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F-F History status: Exact match	10	4
101	HL_98864.3 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Updated, 1 parent T-loop with unstacked turn (4)	10	4
102	HL_15296.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	4
103	HL_82710.3 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	4
104	HL_01182.1 View exemplar Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F History status: Exact match	14	4
105	HL_12111.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG (1)	5	4
106	HL_40612.1 View exemplar Basepair signature: cWW History status: New id, 1 parent	2	3
107	HL_08550.2 View exemplar Basepair signature: cWW-F-F-F-cSH History status: Updated, 1 parent	7	3
108	HL_16651.1 View exemplar Basepair signature: cWW History status: Exact match	2	3
109	HL_68791.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	3
110	HL_88364.4 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F History status: Updated, 1 parent	15	3
111	HL_02817.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	3
112	HL_65256.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	3
113	HL_69186.2 View exemplar Basepair signature: cWW-cWW-F-F History status: Updated, 1 parent tRNA anticodon loop with synthetase (3)	6	3
114	HL_37671.1 View exemplar Basepair signature: cWW-tWW-F-F-F History status: New id, 1 parent Pseudoknot (3)	7	3
115	HL_50525.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	3
116	HL_31962.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: New id, no parents	8	3
117	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	12	3
118	HL_50765.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 2 parents	10	3
119	HL_04642.3 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent tRNA D-loop (3)	7	3
120	HL_35113.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	3
121	HL_61768.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents	6	3
122	HL_76590.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	11	3
123	HL_07380.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents GNRA (1)	6	3
124	HL_67667.4 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent	4	3
125	HL_94376.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (2)	11	3
126	HL_68571.1 View exemplar Basepair signature: cWW-tSH-tHS-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	17	3
127	HL_91503.8 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	3
128	HL_68572.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	3
129	HL_36488.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	3
130	HL_99373.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F-F-F-F History status: New id, 2 parents	11	3
131	HL_16583.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
132	HL_29561.1 View exemplar Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F History status: Exact match	16	2
133	HL_60499.1 View exemplar Basepair signature: cWW-cWW-cWH-F-F-F-F-F History status: New id, no parents	11	2
134	HL_74379.5 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Updated, 1 parent	9	2
135	HL_79745.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
136	HL_84585.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
137	HL_37101.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match tRNA D-loop (2)	7	2
138	HL_60848.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F History status: Exact match	12	2
139	HL_02621.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
140	HL_57863.1 View exemplar Basepair signature: cWW-F-F-cWH-cWH-F History status: Exact match G-quadruplex fragment (2)	9	2
141	HL_69139.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	2
142	HL_12758.3 View exemplar Basepair signature: cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH History status: Exact match G-quadruplex (2)	22	2
143	HL_09841.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	2
144	HL_47732.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	2
145	HL_57992.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	4	2
146	HL_86012.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match T-loop with unstacked turn (2)	8	2
147	HL_24179.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: New id, 1 parent	7	2
148	HL_88397.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, no parents tRNA D-loop (2)	7	2
149	HL_53014.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	2
150	HL_10456.1 View exemplar Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F History status: Exact match	17	2
151	HL_34964.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	9	2
152	HL_32152.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent Anticodon loop related (1)	8	2
153	HL_44740.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
154	HL_81312.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	2
155	HL_93383.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	9	2
156	HL_20535.3 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
157	HL_48408.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: New id, 1 parent	10	2
158	HL_70052.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: New id, no parents	11	2
159	HL_26027.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent Mini UNCG related (1)	3	2
160	HL_65821.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent	9	2
161	HL_10611.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	2
162	HL_70658.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	12	2
163	HL_00557.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	7	2
164	HL_89498.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	10	2
165	HL_55305.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
166	HL_93658.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Exact match T-loop with 3 stacked bulged bases (1)	10	2
167	HL_49073.1 View exemplar Basepair signature: cWW-cWS History status: New id, no parents UNCG related (1)	4	2
168	HL_71391.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
169	HL_98821.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: New id, 1 parent	11	2
170	HL_00824.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Pseudoknot (1)	8	2
171	HL_39243.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
172	HL_32704.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F History status: New id, no parents Pseudoknot geometry (2)	15	2
173	HL_51121.1 View exemplar Basepair signature: cWW-F-F-F-F-cSH-F-F-F History status: New id, no parents	11	2
174	HL_78283.1 View exemplar Basepair signature: cWW-cWS-cWW-cWW-cWS History status: New id, 1 parent	8	2
175	HL_91228.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Exact match	9	2
176	HL_18565.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	8	2
177	HL_32871.1 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: New id, 1 parent	9	2
178	HL_94488.1 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F History status: Exact match Pseudoknot geometry with G-bulge (1)	12	2
179	HL_99324.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	17	2
180	HL_39665.1 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	14	2
181	HL_63151.1 View exemplar Basepair signature: cWW-tSH-F-F History status: New id, 1 parent	6	2
182	HL_33487.1 View exemplar Basepair signature: cWW-cWW History status: New id, 1 parent	4	2
183	HL_56676.1 View exemplar Basepair signature: cWW-F-F History status: Exact match UNCG variation (1)	6	2
184	HL_49556.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-F-F-F History status: New id, 1 parent tRNA D-loop (2)	11	2
185	HL_60358.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	2
186	HL_51858.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: New id, no parents	8	1
187	HL_63355.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
188	HL_91641.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F History status: Exact match	16	1
189	HL_19136.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: New id, 1 parent	7	1
190	HL_56954.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
191	HL_84433.1 View exemplar Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F History status: Exact match	14	1
192	HL_29762.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
193	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	13	1
194	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	11	1
195	HL_33983.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
196	HL_46984.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	8	1
197	HL_23509.1 View exemplar Basepair signature: cSH-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
198	HL_16725.1 View exemplar Basepair signature: cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH-F History status: Exact match	23	1
199	HL_42985.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, no parents	6	1
200	HL_52616.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	17	1
201	HL_80008.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	1
202	HL_19930.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
203	HL_85461.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	15	1
204	HL_23600.1 View exemplar Basepair signature: cWW-F-cWH-F History status: Exact match	6	1
205	HL_50318.1 View exemplar Basepair signature: cWW-cSH-F-F History status: Exact match	6	1
206	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	1
207	HL_76094.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match	5	1
208	HL_16991.1 View exemplar Basepair signature: cWW-cWH-cWH-F-cWH-F History status: Exact match G-quadruplex fragment (1)	8	1
209	HL_42986.1 View exemplar Basepair signature: cWW-tSH-R-R History status: Exact match	19	1
210	HL_80411.1 View exemplar Basepair signature: cWW-F-cSH-F-F-F-F History status: Exact match tRNA D-loop (1)	9	1
211	HL_97714.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: New id, 1 parent	10	1
212	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	12	1
213	HL_04641.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
214	HL_65266.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
215	HL_47854.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
216	HL_58224.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
217	HL_24792.1 View exemplar Basepair signature: cWW-cWS-F-F-F History status: Exact match	6	1
218	HL_65313.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
219	HL_10466.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
220	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	13	1
221	HL_86417.1 View exemplar Basepair signature: cWW-F-F History status: New id, no parents	4	1
222	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	19	1
223	HL_38046.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
224	HL_50851.1 View exemplar Basepair signature: cWW-cWH-cWH-cWH-cWH-F History status: Exact match G-quadruplex fragment (1)	9	1
225	HL_07074.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	11	1
226	HL_35354.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	21	1
227	HL_26934.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
228	HL_61907.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
229	HL_76842.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (1)	7	1
230	HL_18423.1 View exemplar Basepair signature: cWW-tSH-tHS-F History status: Exact match	7	1
231	HL_45232.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, no parents	8	1
232	HL_20781.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
233	HL_59330.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
234	HL_62737.1 View exemplar Basepair signature: cWW-F-F-cSH History status: New id, no parents Other HL (1)	6	1
235	HL_45584.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-tHH-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	50	1
236	HL_55605.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	12	1
237	HL_11542.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	1
238	HL_21400.1 View exemplar Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH History status: Exact match G-quadruplex (1)	18	1
239	HL_39567.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	1
240	HL_07903.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
241	HL_49514.1 View exemplar Basepair signature: cWW-tHH-F-F-F History status: New id, no parents	7	1
242	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	20	1
243	HL_73580.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: New id, 1 parent	8	1
244	HL_87266.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: New id, no parents	10	1
245	HL_16270.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, no parents	11	1
246	HL_08179.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F History status: Exact match	11	1
247	HL_18978.1 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F History status: Exact match	9	1
248	HL_46486.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, no parents	6	1
249	HL_84331.1 View exemplar Basepair signature: cWW-F-F History status: New id, no parents	4	1
250	HL_94980.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
251	HL_23010.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
252	HL_74027.1 View exemplar Basepair signature: cWW History status: New id, no parents	17	1

Coloring options:
Nucleotide numbers

Exact match 129; Updated, 1 parent 41; New id, 1 parent 39; New id, 2 parents 13; New id, no parents 18; Updated, 2 parents 9; New id, > 2 parents 3;

Hairpin Loop Motif Atlas Release 4.1 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 4.1

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