Motif HL_65478.1 Version HL_65478.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3AKZ_010 | 3AKZ | 0.2288 | 4 | tRNA D-loop | E | tRNA | U | 13 | A | 14 | A | 15 | A | 21 | G | 22 | cWW | cWS |
| 2 | HL_5B63_003 | 5B63 | 0.0000 | 6 | tRNA D-loop | D | tRNA | C | 913 | A | 914 | A | 915 | A | 922 | G | 923 | cWW | ncWS |
| 3 | HL_5AXM_001 | 5AXM | 0.1958 | 5 | tRNA D-loop | P | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | ncWS |
| 4 | HL_3WQY_001 | 3WQY | 0.4776 | 4 | tRNA D-loop | C | tRNA | C | 1613 | A | 1614 | G | 1615 | A | 1621 | G | 1622 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAACGGUAG | 1 |
| CAAUUGGAUAG | 1 |
| CAGUUGGGAG | 1 |
| CAGCGGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACGGUA | 1 |
| AAUUGGAUA | 1 |
| AGUUGGGA | 1 |
| AGCGGGA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (4)
- Basepair signature
- cWW-cWS-F
- Heat map statistics
- Min 0.20 | Avg 0.28 | Max 0.58
Coloring options: