Motif HL_65478.1 Version HL_65478.1 of this group appears in releases 4.0 to 4.0
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_3AKZ_010 | 3AKZ | 0.2288 | 4 | tRNA D-loop | E | tRNAGln | U | 13 | A | 14 | A | 15 | A | 21 | G | 22 | cWW | cWS |
2 | HL_5B63_003 | 5B63 | 0.0000 | 6 | tRNA D-loop | D | tRNA | C | 913 | A | 914 | A | 915 | A | 922 | G | 923 | cWW | ncWS |
3 | HL_5AXM_001 | 5AXM | 0.1958 | 5 | tRNA D-loop | P | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | ncWS |
4 | HL_3WQY_001 | 3WQY | 0.4776 | 4 | tRNA D-loop | C | tRNA | C | 1613 | A | 1614 | G | 1615 | A | 1621 | G | 1622 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UAACGGUAG | 1 |
CAAUUGGAUAG | 1 |
CAGUUGGGAG | 1 |
CAGCGGGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AACGGUA | 1 |
AAUUGGAUA | 1 |
AGUUGGGA | 1 |
AGCGGGA | 1 |
Release history
Release | 4.0 |
---|---|
Date | 2025-08-13 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (4)
- Basepair signature
- cWW-cWS-F
- Heat map statistics
- Min 0.20 | Avg 0.28 | Max 0.58
Coloring options: