Motif HL_65517.1 Version HL_65517.1 of this group appears in releases 3.19 to 3.24
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4R4V_005 | 4R4V | 0.0000 | 0 | Varkud satellite (VS) ribozyme helix 1 | A | VS ribozyme RNA | C | 626||||7_556 | G | 627||||7_556 | U | 628||||7_556 | C | 629||||7_556 | G | 630||||7_556 | U | 631||||7_556 | C | 632||||7_556 | G | 633||||7_556 | G | 634||||7_556 | cWW | tSH | |
| 2 | HL_4R4V_001 | 4R4V | 0.0000 | 0 | Varkud satellite (VS) ribozyme helix 1 | A | VS ribozyme RNA | C | 626 | G | 627 | U | 628 | C | 629 | G | 630 | U | 631 | C | 632 | G | 633 | G | 634 | cWW | tSH | |
| 3 | HL_5J7L_134 | 5J7L | 0.8702 | 1 | DA | LSU rRNA | U | 59 | G | 60 | U | 62 | A | 63 | A | 64 | U | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUCGUCGG | 2 |
| UGCUAAUCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCGUCG | 2 |
| GCUAAUCU | 1 |
- Annotations
-
- Varkud satellite (VS) ribozyme helix 1 (2)
- Basepair signature
- cWW-tSH-R-R-R-R-R
- Heat map statistics
- Min 0.87 | Avg 0.39 | Max 0.87
Coloring options: