Motif HL_65532.1 Version HL_65532.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4QK9_003 | 4QK9 | 0.0000 | 2 | A | C-di-AMP riboswitch | U | 72 | U | 75 | C | 76 | U | 77 | C | 78 | U | 79 | U | 80 | U | 81 | C | 82 | G | 83 | cWW | cSH |
| 2 | HL_4R0D_002 | 4R0D | 0.7797 | 1 | A | Group II catalytic intron | G | 48 | A | 50 | U | 51 | C | 52 | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | U | 58 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGUCUCUUUCG | 1 |
| GAAUCGUUCAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUCUCUUUC | 1 |
| AAUCGUUCA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R-R-R-cSH
- Heat map statistics
- Min 0.78 | Avg 0.39 | Max 0.78
Coloring options: