Motif HL_66226.1 Version HL_66226.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 4-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2A64_005 | 2A64 | 0.0000 | 0 | A | RNase P class B | G | 288 | G | 289 | A | 290 | A | 291 | A | 292 | U | 293 | G | 294 | A | 295 | A | 296 | C | 297 | cWW | tSH | tHW | |
| 2 | HL_8C3A_214 | 8C3A | 0.8130 | 2 | CM | SSU rRNA | U | 1039 | U | 1040 | C | 1041 | U | 1043 | U | 1044 | U | 1045 | A | 1046 | U | 1048 | G | 1049 | A | 1050 | cWW | ncWWa | ||
| 3 | HL_5TBW_052 | 5TBW | 0.9205 | 1 | 1 | LSU rRNA | A | 2441 | G | 2442 | A | 2443 | C | 2444 | A | 2445 | A | 2502 | G | 2503 | U | 2504 | U | 2505 | U | 2506 | cWW | ncWB |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAAUGAAC | 1 |
| UUCUUUUAUUGA | 1 |
| AGACAUAGUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAUGAA | 1 |
| UCUUUUAUUG | 1 |
| GACAUAGUU | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.81 | Avg 0.57 | Max 0.92
Coloring options: