HL_8C3A_214

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUCUUUUAUUGA

Length

12 nucleotides

Bulged bases (A, C, G, U)

1047U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_66226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8C3A|1|CM|U|1039
8C3A|1|CM|U|1040
8C3A|1|CM|C|1041
8C3A|1|CM|U|1042
8C3A|1|CM|U|1043
8C3A|1|CM|U|1044
8C3A|1|CM|U|1045
8C3A|1|CM|A|1046
8C3A|1|CM|U|1047
8C3A|1|CM|U|1048
8C3A|1|CM|G|1049
8C3A|1|CM|A|1050

Current chains

Chain CM

18S

Nearby chains

Chain CO

40S ribosomal protein S1

Chain DO

40S ribosomal protein S27