Motif HL_66853.1 Version HL_66853.1 of this group appears in releases 3.77 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4MGN_002 | 4MGN | 0.3247 | 2 | B | tRNA-glycine | C | 13 | A | 14 | G | 15 | G | 18 | U | 19 | A | 20 | G | 21 | cWW | ncWS | cSH | |
| 2 | HL_8S95_001 | 8S95 | 0.2693 | 3 | C | Lysine tRNA scaffold,Poliovirus cloverleaf RNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | ncWS | ncSH | |
| 3 | HL_4YCO_001 | 4YCO | 0.2971 | 3 | D | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | cWS | cSH | |
| 4 | HL_6CU1_003 | 6CU1 | 0.2954 | 2 | A | Y RNA-like | C | 58 | A | 59 | A | 60 | G | 63 | U | 64 | A | 65 | G | 66 | cWW | cWS | cSH | |
| 5 | HL_1H4S_001 | 1H4S | 0.2901 | 4 | T | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | cSH | ||
| 6 | HL_7UZ0_001 | 7UZ0 | 0.2643 | 2 | A | tRNA | C | 13 | A | 14 | G | 15 | G | 18 | U | 19 | A | 20 | G | 21 | cWW | ncSH | ||
| 7 | HL_7E8O_001 | 7E8O | 0.2615 | 2 | X | tRNA | C | 13 | A | 14 | G | 15 | G | 18 | U | 19 | A | 20 | G | 21 | cWW | cSH | ||
| 8 | HL_4WJ4_001 | 4WJ4 | 0.0000 | 3 | B | tRNA | C | 13 | A | 14 | G | 15 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUGGUAG | 3 |
| CAGUCGGUAG | 3 |
| CAAUGGUAG | 1 |
| CAGCCCGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUGGUA | 3 |
| AGUCGGUA | 3 |
| AAUGGUA | 1 |
| AGCCCGGUA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 |
|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cWS-F-cSH
- Heat map statistics
- Min 0.19 | Avg 0.28 | Max 0.41
Coloring options: