RNA 3D Hub //

Motif HL_66853.1 Version HL_66853.1 of this group appears in releases 3.77 to 3.83

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 71-72-64-5
1 HL_4MGN_0024MGN0.32472BtRNA-glycineC13A14G15G18U19A20G21cWWncWScSH
2 HL_8S95_0018S950.26933CEnterovirus 5' cloverleaf cis-acting replication elementC13A14G15G19U20A21G22cWWncWSncSH
3 HL_4YCO_0014YCO0.29713D tRNAC13A14G15G19U20A21G22cWWcWScSH
4 HL_6CU1_0036CU10.29542AY RNA-likeC58A59A60G63U64A65G66cWWcWScSH
5 HL_1H4S_0011H4S0.29014T tRNAC13A14G15G19U20A21G22cWWcSH
6 HL_7UZ0_0017UZ00.26432A tRNAC13A14G15G18U19A20G21cWWncSH
7 HL_7E8O_0017E8O0.26152X tRNAC13A14G15G18U19A20G21cWWcSH
8 HL_4WJ4_0014WJ40.00003B tRNAC13A14G15G19U20A21G22cWWncSW

3D structures

Complete motif including flanking bases
SequenceCounts
CAGUGGUAG3
CAGUCGGUAG3
CAAUGGUAG1
CAGCCCGGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
AGUGGUA3
AGUCGGUA3
AAUGGUA1
AGCCCGGUA1

Release history

Release3.773.783.793.803.813.823.83
Date2023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-24
StatusNew id, > 2 parentsExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (8)
    • Basepair signature
    cWW-cWS-F-cSH
    Heat map statistics
    Min 0.19 | Avg 0.28 | Max 0.41
    Help

    Coloring options:

    HL_4MGN_002:HL_4MGN_002 = 0HL_4MGN_002:HL_8S95_001 = 0.3001HL_4MGN_002:HL_4YCO_001 = 0.3516HL_4MGN_002:HL_6CU1_003 = 0.3608HL_4MGN_002:HL_1H4S_001 = 0.3937HL_4MGN_002:HL_7UZ0_001 = 0.3613HL_4MGN_002:HL_7E8O_001 = 0.4003HL_4MGN_002:HL_4WJ4_001 = 0.3247HL_8S95_001:HL_4MGN_002 = 0.3001HL_8S95_001:HL_8S95_001 = 0HL_8S95_001:HL_4YCO_001 = 0.2297HL_8S95_001:HL_6CU1_003 = 0.2418HL_8S95_001:HL_1H4S_001 = 0.3563HL_8S95_001:HL_7UZ0_001 = 0.3984HL_8S95_001:HL_7E8O_001 = 0.3466HL_8S95_001:HL_4WJ4_001 = 0.2693HL_4YCO_001:HL_4MGN_002 = 0.3516HL_4YCO_001:HL_8S95_001 = 0.2297HL_4YCO_001:HL_4YCO_001 = 0HL_4YCO_001:HL_6CU1_003 = 0.1891HL_4YCO_001:HL_1H4S_001 = 0.2884HL_4YCO_001:HL_7UZ0_001 = 0.4115HL_4YCO_001:HL_7E8O_001 = 0.384HL_4YCO_001:HL_4WJ4_001 = 0.2971HL_6CU1_003:HL_4MGN_002 = 0.3608HL_6CU1_003:HL_8S95_001 = 0.2418HL_6CU1_003:HL_4YCO_001 = 0.1891HL_6CU1_003:HL_6CU1_003 = 0HL_6CU1_003:HL_1H4S_001 = 0.2812HL_6CU1_003:HL_7UZ0_001 = 0.399HL_6CU1_003:HL_7E8O_001 = 0.3896HL_6CU1_003:HL_4WJ4_001 = 0.2954HL_1H4S_001:HL_4MGN_002 = 0.3937HL_1H4S_001:HL_8S95_001 = 0.3563HL_1H4S_001:HL_4YCO_001 = 0.2884HL_1H4S_001:HL_6CU1_003 = 0.2812HL_1H4S_001:HL_1H4S_001 = 0HL_1H4S_001:HL_7UZ0_001 = 0.2784HL_1H4S_001:HL_7E8O_001 = 0.2864HL_1H4S_001:HL_4WJ4_001 = 0.2901HL_7UZ0_001:HL_4MGN_002 = 0.3613HL_7UZ0_001:HL_8S95_001 = 0.3984HL_7UZ0_001:HL_4YCO_001 = 0.4115HL_7UZ0_001:HL_6CU1_003 = 0.399HL_7UZ0_001:HL_1H4S_001 = 0.2784HL_7UZ0_001:HL_7UZ0_001 = 0HL_7UZ0_001:HL_7E8O_001 = 0.243HL_7UZ0_001:HL_4WJ4_001 = 0.2643HL_7E8O_001:HL_4MGN_002 = 0.4003HL_7E8O_001:HL_8S95_001 = 0.3466HL_7E8O_001:HL_4YCO_001 = 0.384HL_7E8O_001:HL_6CU1_003 = 0.3896HL_7E8O_001:HL_1H4S_001 = 0.2864HL_7E8O_001:HL_7UZ0_001 = 0.243HL_7E8O_001:HL_7E8O_001 = 0HL_7E8O_001:HL_4WJ4_001 = 0.2615HL_4WJ4_001:HL_4MGN_002 = 0.3247HL_4WJ4_001:HL_8S95_001 = 0.2693HL_4WJ4_001:HL_4YCO_001 = 0.2971HL_4WJ4_001:HL_6CU1_003 = 0.2954HL_4WJ4_001:HL_1H4S_001 = 0.2901HL_4WJ4_001:HL_7UZ0_001 = 0.2643HL_4WJ4_001:HL_7E8O_001 = 0.2615HL_4WJ4_001:HL_4WJ4_001 = 0HL_4MGN_002HL_8S95_001HL_4YCO_001HL_6CU1_003HL_1H4S_001HL_7UZ0_001HL_7E8O_001HL_4WJ4_001Discrepancy0.000.100.200.300.40
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