Motif HL_66853.3 Version HL_66853.3 of this group appears in releases 3.85 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)		1		2		3		4		5		6		7	1-7	2-6	4-5
1	HL_8KAH_003	8KAH	0.9402	0	I	C	86	G	87	A	88	G	89	U	90	C	91	G	92	cWW
2	HL_7MDL_001	7MDL	0.6786	1	E	A	14\|\|A	G	15\|\|A	U	16\|\|A	G	19\|\|A	U	20\|\|A	C	20\|\|A\|A	U	21\|\|A	cWW	ncWW	ncSW
3	HL_4MGN_002	4MGN	0.3247	2	B	C	13	A	14	G	15	G	18	U	19	A	20	G	21	cWW	ncWS	cSH
4	HL_8UO6_005	8UO6	0.2691	3	B	C	13	A	14	G	15	G	19	U	20	A	21	G	22	cWW	ncWS	cSH
5	HL_8UO6_001	8UO6	0.2732	3	A	C	13	A	14	G	15	G	19	U	20	A	21	G	22	cWW	ncWS	cSH
6	HL_4YCO_001	4YCO	0.2971	3	D	C	13	A	14	G	15	G	19	U	20	A	21	G	22	cWW	cWS	cSH
7	HL_6CU1_003	6CU1	0.2954	2	A	C	58	A	59	A	60	G	63	U	64	A	65	G	66	cWW	cWS	cSH
8	HL_8S95_001	8S95	0.2693	3	C	C	13	A	14	G	15	G	19	U	20	A	21	G	22	cWW	ncWS	ncSH
9	HL_4WJ4_001	4WJ4	0.0000	3	B	C	13	A	14	G	15	G	19	U	20	A	21	G	22	cWW		ncSW
10	HL_7E8O_001	7E8O	0.2615	2	X	C	13	A	14	G	15	G	18	U	19	A	20	G	21	cWW		cSH
11	HL_7UZ0_001	7UZ0	0.2643	2	A	C	13	A	14	G	15	G	18	U	19	A	20	G	21	cWW		ncSH
12	HL_1H4S_001	1H4S	0.2901	4	T	C	13	A	14	G	15	G	19	U	20	A	21	G	22	cWW		cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
CAGUCGGUAG	5
CAGUGGUAG	3
CGAGUCG	1
AGUGGUCU	1
CAAUGGUAG	1
CAGCCCGGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGUCGGUA	5
AGUGGUA	3
GAGUC	1
GUGGUC	1
AAUGGUA	1
AGCCCGGUA	1

Release history

Release	3.85	3.86	3.87
Date	2024-06-19	2024-07-17	2024-08-14
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (12)
Basepair signature: cWW-cWS-F-cSH
Heat map statistics: Min 0.09 | Avg 0.42 | Max 0.97

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Coloring options: Nucleotide numbers

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