Motif HL_68304.5 Version HL_68304.5 of this group appears in releases 3.18 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3KTW_001 | 3KTW | 0.8658 | 0 | GNRA | C | SRP RNA | U | 163 | G | 164 | G | 165 | A | 166 | G | 167 | G | 168 | cWW | |
| 2 | HL_4WF9_031 | 4WF9 | 0.7503 | 0 | GNRA | X | LSU rRNA | C | 1260 | G | 1261 | U | 1262 | A | 1263 | A | 1264 | G | 1265 | cWW | |
| 3 | HL_4LFB_012 | 4LFB | 0.0000 | 1 | GNRA | A | SSU rRNA | C | 458 | G | 459 | A | 460 | G | 462 | A | 463 | G | 474 | cWW | tSH |
| 4 | HL_6CZR_083 | 6CZR | 0.2189 | 1 | GNRA | 1a | SSU rRNA | C | 453 | G | 454 | A | 455 | G | 457 | A | 458 | G | 459 | cWW | ntSH |
| 5 | HL_6ASO_001 | 6ASO | 0.3411 | 1 | GNRA | I | U6 snRNA | U | 70 | G | 71 | C | 72 | U | 74 | A | 75 | A | 76 | ncWW | tSH |
| 6 | HL_5J7L_148 | 5J7L | 0.3130 | 1 | GNRA | DA | LSU rRNA | C | 487 | G | 488 | G | 489 | G | 491 | A | 492 | G | 493 | cWW | tSH |
| 7 | HL_5J7L_026 | 5J7L | 0.4944 | 1 | GNRA | AA | SSU rRNA | U | 1165 | G | 1166 | A | 1167 | A | 1169 | A | 1170 | A | 1171 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACGAG | 2 |
| UGGAGG | 1 |
| CGUAAG | 1 |
| UGCAUAA | 1 |
| CGGCGAG | 1 |
| UGAUAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACGA | 2 |
| GGAG | 1 |
| GUAA | 1 |
| GCAUA | 1 |
| GGCGA | 1 |
| GAUAA | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA (7)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.22 | Avg 0.52 | Max 0.98
Coloring options: