Motif HL_68697.2 Version HL_68697.2 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-4 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4FAW_009 | 4FAW | 0.6360 | 0 | A | Group II catalytic intron D1-D4-3 | C | 368 | G | 369 | A | 370 | A | 371 | C | 372 | G | 373 | cWW | tSW | |
| 2 | HL_3V2F_063 | 3V2F | 0.0000 | 0 | A | 23S Ribosomal RNA | C | 2701 | U | 2702 | C | 2703 | C | 2704 | A | 2705 | G | 2706 | cWW | cSH | |
| 3 | HL_4BPP_035 | 4BPP | 0.8401 | 0 | A | 18S RRNA | A | 1660 | G | 1661 | C | 1662 | A | 1663 | A | 1664 | U | 1665 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAACG | 1 |
| CUCCAG | 1 |
| AGCAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAC | 1 |
| UCCA | 1 |
| GCAA | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_68697.2 | Only in the parent motif |
|---|---|---|---|
| HL_68697.1 Compare | HL_3V2F_063, HL_4FAW_009 | HL_4BPP_035 |
Children motifs
| Child motif | Common motif instances | Only in HL_68697.2 | Only in the child motif |
|---|---|---|---|
| HL_68697.3 Compare | HL_4FAW_009, HL_4BPP_035 | HL_3V2F_063 | HL_4NVV_063 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.64 | Avg 0.53 | Max 0.92
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