Motif HL_68697.3 Version HL_68697.3 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-4 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4BPP_035 | 4BPP | 0.8200 | 0 | A | SSU rRNA | A | 1660 | G | 1661 | C | 1662 | A | 1663 | A | 1664 | U | 1665 | ncWW | ||
| 2 | HL_4NVV_063 | 4NVV | 0.0000 | 0 | A | LSU rRNA | C | 2713 | U | 2714 | C | 2715 | C | 2716 | A | 2717 | G | 2718 | cWW | cSH | |
| 3 | HL_4FAW_009 | 4FAW | 0.6503 | 0 | A | Group II catalytic intron D1-D4-3 | C | 368 | G | 369 | A | 370 | A | 371 | C | 372 | G | 373 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGCAAU | 1 |
| CUCCAG | 1 |
| CGAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAA | 1 |
| UCCA | 1 |
| GAAC | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_68697.3 | Only in the parent motif |
|---|---|---|---|
| HL_68697.2 Compare | HL_4FAW_009, HL_4BPP_035 | HL_4NVV_063 | HL_3V2F_063 |
Children motifs
| Child motif | Common motif instances | Only in HL_68697.3 | Only in the child motif |
|---|---|---|---|
| HL_70872.1 Compare | HL_4NVV_063 | HL_4FAW_009, HL_4BPP_035 | |
| HL_84967.1 Compare | HL_4BPP_035 | HL_4NVV_063, HL_4FAW_009 | HL_3QSY_002 |
| HL_66677.1 Compare | HL_4FAW_009 | HL_4NVV_063, HL_4BPP_035 | HL_3IVK_008, HL_1VW3_039 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.65 | Avg 0.53 | Max 0.92
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