Motif HL_68897.1 Version HL_68897.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 3-9 | 3-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J7Y_023 | 3J7Y | 0.0000 | 3 | A | LSU rRNA | A | 2518 | G | 2519 | C | 2520 | A | 2521 | U | 2522 | A | 2524 | C | 2525 | C | 2526 | G | 2528 | U | 2529 | A | 2530 | U | 2532 | cWW | tHH | ||
| 2 | HL_4V19_022 | 4V19 | 0.3571 | 3 | A | LSU rRNA | A | 848 | G | 849 | C | 850 | A | 851 | U | 852 | A | 854 | C | 855 | U | 856 | G | 858 | U | 859 | A | 860 | U | 862 | cWW | tSs | tWW | tHH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGCAUCACCAGUAUU | 1 |
| AGCAUUACUAGUAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAUCACCAGUAU | 1 |
| GCAUUACUAGUAU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tHH-tSS-tWW-R-R-R-R-R
- Heat map statistics
- Min 0.36 | Avg 0.18 | Max 0.36
Coloring options: