Motif HL_69752.2 Version HL_69752.2 of this group appears in releases 3.96 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8Y05_001 | 8Y05 | 0.0937 | 4 | B | RNA (29-MER) | C | -12 | U | -11 | G | -6 | cWW | |
| 2 | HL_5XUZ_001 | 5XUZ | 0.0622 | 4 | B | crRNA | C | -12 | U | -11 | G | -6 | cWW | |
| 3 | HL_5ID6_001 | 5ID6 | 0.0004 | 4 | G | RNA (21-mer) | C | 11 | U | 12 | G | 17 | cWW | |
| 4 | HL_8Y03_001 | 8Y03 | 0.0000 | 4 | G | RNA (41-MER) | C | 11 | U | 12 | G | 17 | cWW | |
| 5 | HL_8Y0B_001 | 8Y0B | 0.1433 | 3 | B | RNA (53-MER) | C | -11 | U | -10 | G | -6 | cWW | |
| 6 | HL_5NFV_001 | 5NFV | 0.1176 | 3 | B | pre-crRNA | C | -10 | U | -9 | G | -5 | cWW | |
| 7 | HL_4M6D_004 | 4M6D | 0.8515 | 2 | D-loop related | H | aptamer | C | 32 | U | 33 | G | 36 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAGUG | 4 |
| CUGUUG | 2 |
| CUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAGU | 4 |
| UGUU | 2 |
| UUA | 1 |
- Annotations
-
- (6)
- D-loop related (1)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.00 | Avg 0.30 | Max 0.85
Coloring options: