Motif HL_70644.1 Version HL_70644.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J6B_060 | 3J6B | 0.7768 | 0 | e | E-site tRNA | G | 6 | G | 63 | A | 64 | G | 65 | U | 66 | C | 67 | cWW | |
| 2 | HL_4IOA_036 | 4IOA | 0.0000 | 1 | Pseudoknot geometry with 3' bulge (H) | X | LSU rRNA | G | 1508 | A | 1509 | A | 1510 | A | 1511 | A | 1512 | C | 1514 | cWW |
| 3 | HL_4PQV_002 | 4PQV | 0.7082 | 1 | Pseudoknot geometry | A | Flavivirus 3' UTR stem loop IV | C | 28 | G | 29 | C | 30 | C | 31 | G | 32 | G | 34 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGUC | 1 |
| GAAAAUC | 1 |
| CGCCGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGU | 1 |
| AAAAU | 1 |
| GCCGA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Pseudoknot geometry with 3' bulge (H) (1)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.71 | Avg 0.53 | Max 0.88
Coloring options: