Motif HL_71924.1 Version HL_71924.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-8 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_049 | 5TBW | 0.9804 | 1 | 1 | LSU rRNA | G | 2253 | U | 2254 | A | 2255 | A | 2256 | C | 2257 | U | 2258 | A | 2259 | G | 2261 | A | 2262 | C | 2263 | cWW | ||||
| 2 | HL_2A64_003 | 2A64 | 0.8503 | 2 | A | ribonuclease P RNA | C | 97 | G | 98 | A | 99 | A | 100 | U | 101 | C | 103 | A | 104 | A | 106 | A | 107 | G | 108 | cWW | tSH | ncSH | ||
| 3 | HL_2A64_005 | 2A64 | 0.0000 | 0 | A | ribonuclease P RNA | G | 288 | G | 289 | A | 290 | A | 291 | A | 292 | U | 293 | G | 294 | A | 295 | A | 296 | C | 297 | cWW | tSH | tHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAACUAUGAC | 1 |
| CGAAUCCAUAAG | 1 |
| GGAAAUGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAACUAUGA | 1 |
| GAAUCCAUAA | 1 |
| GAAAUGAA | 1 |
- Annotations
- Basepair signature
- cWW-tSH-F-F-F-F-F-F
- Heat map statistics
- Min 0.84 | Avg 0.59 | Max 0.98
Coloring options: