Motif HL_71924.2 Version HL_71924.2 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-7 | 4-5 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_049 | 8C3A | 0.1076 | 1 | 1 | LSU rRNA | G | 2231 | U | 2232 | A | 2233 | C | 2235 | U | 2236 | A | 2237 | U | 2238 | G | 2239 | A | 2240 | C | 2241 | cWW | tHW | ||
| 2 | HL_5TBW_049 | 5TBW | 0.0000 | 1 | 1 | LSU rRNA | G | 2253 | U | 2254 | A | 2255 | C | 2257 | U | 2258 | A | 2259 | U | 2260 | G | 2261 | A | 2262 | C | 2263 | cWW | tHW | ||
| 3 | HL_2A64_003 | 2A64 | 0.8350 | 2 | A | ribonuclease P RNA | C | 97 | G | 98 | A | 99 | U | 101 | C | 103 | A | 104 | U | 105 | A | 106 | A | 107 | G | 108 | cWW | tSH | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAACUAUGAC | 2 |
| CGAAUCCAUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAACUAUGA | 2 |
| GAAUCCAUAA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-tHW-F-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.40 | Max 0.86
Coloring options: