HL_8C3A_049

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8C3A|1|1|A|2234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8C3A|1|1|G|2231
8C3A|1|1|U|2232
8C3A|1|1|A|2233
8C3A|1|1|A|2234
8C3A|1|1|C|2235
8C3A|1|1|U|2236
8C3A|1|1|A|2237
8C3A|1|1|U|2238
8C3A|1|1|G|2239
8C3A|1|1|A|2240
8C3A|1|1|C|2241

Current chains

Chain 1

25S

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain g

40S ribosomal protein S30