Motif HL_72451.2 Version HL_72451.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_026 | 5TBW | 0.4567 | 0 | 1 | LSU rRNA | G | 1148 | G | 1149 | A | 1150 | U | 1151 | G | 1152 | A | 1153 | A | 1154 | C | 1155 | cWW | |
| 2 | HL_4V8P_110 | 4V8P | 0.3421 | 0 | D1 | LSU rRNA | G | 1175 | G | 1176 | A | 1177 | U | 1178 | G | 1179 | A | 1180 | A | 1181 | C | 1182 | cWW | |
| 3 | HL_4Y4O_130 | 4Y4O | 0.0000 | 0 | 2A | LSU rRNA | G | 978 | G | 979 | A | 980 | A | 981 | C | 982 | A | 983 | A | 984 | C | 985 | cWW | |
| 4 | HL_4V9F_029 | 4V9F | 0.0988 | 0 | 0 | LSU rRNA | G | 1076 | G | 1077 | A | 1078 | A | 1079 | C | 1080 | A | 1081 | A | 1082 | C | 1083 | cWW | |
| 5 | HL_4IOA_027 | 4IOA | 0.2005 | 0 | X | LSU rRNA | G | 989 | A | 990 | A | 991 | A | 992 | C | 993 | A | 994 | A | 995 | C | 996 | cWW | |
| 6 | HL_5J7L_160 | 5J7L | 0.4378 | 0 | DA | LSU rRNA | G | 978 | A | 979 | A | 980 | A | 981 | C | 982 | A | 983 | A | 984 | C | 985 | cWW | |
| 7 | HL_4WF9_028 | 4WF9 | 0.4559 | 0 | X | LSU rRNA | G | 1022 | A | 1023 | A | 1024 | A | 1025 | C | 1026 | A | 1027 | G | 1028 | C | 1029 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUGAAC | 2 |
| GGAACAAC | 2 |
| GAAACAAC | 2 |
| GAAACAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUGAA | 2 |
| GAACAA | 2 |
| AAACAA | 2 |
| AAACAG | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.35 | Max 0.63
Coloring options: