Motif HL_72451.4 Version HL_72451.4 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8
1	HL_4WF9_028	4WF9	0.4559	X	LSU rRNA	G	1022	A	1023	A	1024	A	1025	C	1026	A	1027	G	1028	C	1029	cWW
2	HL_5J7L_160	5J7L	0.4378	DA	LSU rRNA	G	978	A	979	A	980	A	981	C	982	A	983	A	984	C	985	cWW
3	HL_7A0S_027	7A0S	0.2186	X	LSU rRNA	G	989	A	990	A	991	A	992	C	993	A	994	A	995	C	996	cWW
4	HL_4V9F_029	4V9F	0.0988	0	LSU rRNA	G	1076	G	1077	A	1078	A	1079	C	1080	A	1081	A	1082	C	1083	cWW
5	HL_4Y4O_130	4Y4O	0.0000	2A	LSU rRNA	G	978	G	979	A	980	A	981	C	982	A	983	A	984	C	985	cWW
6	HL_5TBW_026	5TBW	0.4567	1	LSU rRNA	G	1148	G	1149	A	1150	U	1151	G	1152	A	1153	A	1154	C	1155	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAACAAC	2
GGAACAAC	2
GAAACAGC	1
GGAUGAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAACAA	2
GAACAA	2
AAACAG	1
GAUGAA	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-R-R-R-R-R
Heat map statistics: Min 0.10 | Avg 0.33 | Max 0.63

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Coloring options: Nucleotide numbers

Motif HL_72451.4 Version HL_72451.4 of this group appears in releases 3.48 to 3.53 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_72451.4 Version HL_72451.4 of this group appears in releases 3.48 to 3.53

Download

Csv

Json