HL_72657.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	1-5	2-4
1	HL_2AW7_011	2AW7	0.6263	1		A	SSU rRNA	C	419	U	420	C	422	G	423	G	424	cWW	tSW
2	HL_3O30_005	3O30	0.4987	1		1	SSU rRNA	C	230	U	231	C	233	G	234	G	235	cWW	ntSW
3	HL_1S72_005	1S72	0.0000	2		0	LSU rRNA	C	136	U	137	C	139	G	140	G	142	cWW	tSW
4	HL_2QBG_006	2QBG	0.7531	1		B	LSU rRNA	U	137	U	138	C	140	G	141	A	142	cWW	tSW
5	HL_2XZM_011	2XZM	0.6166	1		A	SSU rRNA	C	405	U	406	C	408	G	409	G	410	cWW	tSW
6	HL_2QBG_040	2QBG	0.6058	1		B	LSU rRNA	C	1533	U	1534	C	1536	G	1537	G	1538	cWW	tSW
7	HL_3PYO_042	3PYO	0.6193	1		A	LSU rRNA	C	1691	U	1692	C	1694	G	1695	G	1696	cWW	tSW
8	HL_3O58_043	3O58	0.5502	1		1	LSU rRNA	C	1923	U	1924	C	1926	G	1927	G	1928	cWW	ntSW
9	HL_1FJG_011	1FJG	0.5213	1	UNCG (H)	A	SSU rRNA	C	419	U	420	C	422	G	423	G	424	cWW	tSW
10	HL_1YKV_001	1YKV	0.4914	1		B	Diels-Alder ribozyme	C	220	U	221	C	223	G	224	G	225	cWW	ntSW
11	HL_2AW7_031	2AW7	0.5230	1		A	SSU rRNA	C	1449	U	1450	C	1452	G	1453	G	1454	cWW	tSW
12	HL_1YKV_002	1YKV	0.4584	1		D	Diels-Alder ribozyme	C	220	U	221	C	223	G	224	G	225	ncWW	tSW
13	HL_1S72_044	1S72	0.4224	1	UNCG (H)	0	LSU rRNA	C	1769	U	1770	C	1772	G	1773	G	1774	cWW	tSW
14	HL_2ZJR_042	2ZJR	0.5793	1		X	LSU rRNA	C	1708	U	1709	C	1711	G	1712	G	1713	cWW	tSW
15	HL_1FJG_031	1FJG	0.5411	1	UNCG (H)	A	SSU rRNA	C	1449	U	1450	C	1452	G	1453	G	1454	cWW	tSW
16	HL_1I6U_002	1I6U	0.5492	1		D	16S RRNA FRAGMENT	C	16	U	17	C	19	G	20	G	21	cWW	tSW
17	HL_1UN6_003	1UN6	0.5670	1	UNCG	F	5S RIBOSOMAL RNA	C	15	U	16	C	18	G	19	G	64	cWW	tSW
18	HL_1NBS_006	1NBS	0.6030	1	UNCG	B	RNase P class B	C	152	U	153	C	155	G	156	G	157	cWW	tSW
19	HL_3G78_008	3G78	0.6099	1		A	Group II catalytic intron D1-D4-3	G	338	U	339	C	341	G	342	C	343	cWW	tSW
20	HL_1FJG_009	1FJG	0.6202	1	UNCG (H)	A	SSU rRNA	C	342	U	343	C	345	G	346	G	347	cWW	tSW
21	HL_2AW7_005	2AW7	0.6504	1		A	SSU rRNA	C	207	U	208	C	210	G	211	G	212	cWW	ntSW
22	HL_1F7Y_002	1F7Y	0.6357	1		B	16S RIBOSOMAL RNA FRAGMENT	C	32	U	33	C	35	G	36	G	37	cWW	tSW
23	HL_1UN6_001	1UN6	0.6171	1		E	5S RIBOSOMAL RNA	C	15	U	16	C	18	G	19	G	64	cWW	tSW
24	HL_2HW8_001	2HW8	0.6149	1	UNCG	B	36-MER	C	15	U	16	C	18	G	19	G	20	cWW	tSW
25	HL_1FJG_026	1FJG	0.5858	2		A	SSU rRNA	G	1134	U	1135	C	1137	G	1138	C	1140	cWW	ntSW
26	HL_2QBG_044	2QBG	0.6090	1		B	LSU rRNA	C	1691	U	1692	C	1694	G	1695	G	1696	cWW	tSW
27	HL_1F7Y_001	1F7Y	0.6213	1		B	16S RIBOSOMAL RNA FRAGMENT	C	8	U	9	C	11	G	12	G	13	cWW	tSW
28	HL_1I6U_001	1I6U	0.6669	1	UNCG	C	16S RRNA FRAGMENT	C	16	U	17	C	19	G	20	G	21	cWW	tSW
29	HL_2AW7_009	2AW7	0.6458	1		A	SSU rRNA	C	342	U	343	C	345	G	346	G	347	cWW	tSW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUCGG	18
CUACGG	7
CUUCGCG	1
UUUCGA	1
GUUCGC	1
GUUCGGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCG	20
UACG	7
UUCGC	1
UUCGG	1

Release history

Release	0.1	0.2
Date	2011-12-08	2011-12-08
Status	New id, no parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motif	Common motif instances	Only in HL_72657.1	Only in the child motif
HL_39895.1 Compare	HL_1UN6_003, HL_1I6U_002, HL_2HW8_001, HL_1S72_044, HL_2AW7_009, HL_2QBG_006, HL_1FJG_011, HL_1F7Y_001, HL_1F7Y_002, HL_2ZJR_042, HL_2AW7_011, HL_1FJG_031, HL_2AW7_031, HL_2QBG_040, HL_2XZM_011, HL_2QBG_044, HL_3G78_008, HL_1NBS_006, HL_1FJG_009, HL_2AW7_005, HL_1YKV_002	HL_1I6U_001, HL_1UN6_001, HL_3O30_005, HL_3PYO_042, HL_3O58_043, HL_1FJG_026, HL_1S72_005, HL_1YKV_001	HL_2NUE_001, HL_3V2F_049, HL_3U5F_005, HL_3U5H_012, HL_3V2F_040, HL_4A1B_014, HL_2AW7_023, HL_3V7E_005, HL_3U5H_043, HL_4A1B_042, HL_3U4M_001, HL_3U5F_011
HL_41827.1 Compare	HL_1S72_005, HL_1FJG_026	HL_1UN6_003, HL_1UN6_001, HL_2HW8_001, HL_1F7Y_001, HL_1F7Y_002, HL_2AW7_031, HL_1FJG_031, HL_3PYO_042, HL_1FJG_011, HL_1YKV_001, HL_1NBS_006, HL_2AW7_009, HL_3O30_005, HL_2AW7_005, HL_1YKV_002, HL_1I6U_001, HL_1I6U_002, HL_2XZM_011, HL_3O58_043, HL_3G78_008, HL_1S72_044, HL_2QBG_006, HL_2ZJR_042, HL_2QBG_040, HL_2QBG_044, HL_2AW7_011, HL_1FJG_009	HL_2AW7_026

Motif HL_72657.1 Version HL_72657.1 of this group appears in releases 0.1 to 0.2 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_72657.1 Version HL_72657.1 of this group appears in releases 0.1 to 0.2

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