Motif HL_72846.1 Version HL_72846.1 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_050 | 1VW3 | 0.1967 | 1 | A | 21S ribosomal RNA | U | 2671 | G | 2672 | U | 2674 | U | 2675 | G | 2676 | U | 2677 | A | 2678 | A | 2679 | A | 2680 | cWW | tSH |
| 2 | HL_4QCN_057 | 4QCN | 0.0000 | 1 | A | 23S Ribosomal RNA | C | 2416 | G | 2417 | G | 2419 | U | 2420 | G | 2421 | G | 2422 | A | 2423 | A | 2424 | G | 2425 | cWW | tSH |
| 3 | HL_4IOA_058 | 4IOA | 0.1284 | 1 | X | LSU rRNA | C | 2383 | G | 2384 | G | 2386 | U | 2387 | G | 2388 | G | 2389 | A | 2390 | A | 2391 | G | 2392 | cWW | ntSH |
| 4 | HL_2QBG_061 | 2QBG | 0.1713 | 1 | B | 23S rRNA | U | 2404 | G | 2405 | A | 2407 | U | 2408 | G | 2409 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGUGGAAG | 2 |
| UGAUUGUAAA | 1 |
| UGAAUGGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGUGGAA | 2 |
| GAUUGUAA | 1 |
| GAAUGGAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_72846.1 | Only in the parent motif |
|---|---|---|---|
| HL_89236.1 Compare | HL_1VW3_050, HL_4IOA_058, HL_2QBG_061 | HL_4QCN_057 | HL_1VW3_008, HL_1VW3_057, HL_4NVV_057 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-R-R-R-R-R
- Heat map statistics
- Min 0.13 | Avg 0.14 | Max 0.23
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