Motif HL_89236.1 Version HL_89236.1 of this group appears in releases 1.14 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_050 | 1VW3 | 0.2344 | 1 | A | LSU rRNA | U | 2671 | G | 2672 | U | 2674 | U | 2675 | G | 2676 | U | 2677 | A | 2678 | A | 2679 | A | 2680 | cWW | tSH |
| 2 | HL_4NVV_057 | 4NVV | 0.1257 | 1 | A | LSU rRNA | C | 2416 | G | 2417 | G | 2419 | U | 2420 | G | 2421 | G | 2422 | A | 2423 | A | 2424 | G | 2425 | cWW | tSH |
| 3 | HL_4IOA_058 | 4IOA | 0.0000 | 1 | X | LSU rRNA | C | 2383 | G | 2384 | G | 2386 | U | 2387 | G | 2388 | G | 2389 | A | 2390 | A | 2391 | G | 2392 | cWW | ntSH |
| 4 | HL_2QBG_061 | 2QBG | 0.1595 | 1 | B | LSU rRNA | U | 2404 | G | 2405 | A | 2407 | U | 2408 | G | 2409 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
| 5 | HL_1VW3_057 | 1VW3 | 0.6944 | 1 | A | LSU rRNA | A | 3021 | G | 3022 | U | 3024 | U | 3025 | A | 3026 | U | 3027 | A | 3028 | U | 3029 | U | 3030 | cWW | ncWW |
| 6 | HL_1VW3_008 | 1VW3 | 0.7915 | 0 | A | LSU rRNA | A | 347 | U | 348 | A | 349 | A | 350 | C | 351 | A | 352 | A | 353 | A | 354 | U | 355 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGUGGAAG | 2 |
| UGAUUGUAAA | 1 |
| UGAAUGGAAG | 1 |
| AGUUUAUAUU | 1 |
| AUAACAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGUGGAA | 2 |
| GAUUGUAA | 1 |
| GAAUGGAA | 1 |
| GUUUAUAU | 1 |
| UAACAAA | 1 |
Release history
| Release | 1.14 | 1.15 | 1.16 |
|---|---|---|---|
| Date | 2014-04-27 | 2014-06-15 | 2014-07-26 |
| Status | New id, 2 parents | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_89236.1 | Only in the parent motif |
|---|---|---|---|
| HL_76585.1 Compare | HL_2QBG_061 | HL_1VW3_050, HL_1VW3_008, HL_4IOA_058, HL_1VW3_057, HL_4NVV_057 | |
| HL_90579.3 Compare | HL_4IOA_058 | HL_1VW3_050, HL_1VW3_008, HL_2QBG_061, HL_1VW3_057, HL_4NVV_057 | HL_3V2F_057, HL_3U5H_049 |
Children motifs
| Child motif | Common motif instances | Only in HL_89236.1 | Only in the child motif |
|---|---|---|---|
| HL_72846.1 Compare | HL_1VW3_050, HL_4IOA_058, HL_2QBG_061 | HL_1VW3_008, HL_1VW3_057, HL_4NVV_057 | HL_4QCN_057 |
| HL_20199.1 Compare | HL_1VW3_008, HL_1VW3_057 | HL_1VW3_050, HL_4IOA_058, HL_2QBG_061, HL_4NVV_057 | HL_2HO7_003, HL_3D0U_002, HL_3SUX_001, HL_3DIR_002 |
- Annotations
-
- (6)
- Basepair signature
- cWW-tSH-R-R-R-R-R
- Heat map statistics
- Min 0.13 | Avg 0.44 | Max 0.91
Coloring options: