Motif HL_73266.1 Version HL_73266.1 of this group appears in releases 3.2 to 3.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-7 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1Y26_003 | 1Y26 | 0.3838 | 0 | X | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | |
| 2 | HL_4XNR_003 | 4XNR | 0.3621 | 0 | X | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | |
| 3 | HL_3LA5_003 | 3LA5 | 0.1339 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | |
| 4 | HL_5SWD_006 | 5SWD | 0.1107 | 0 | B | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | |
| 5 | HL_4LX6_003 | 4LX6 | 0.1035 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | |
| 6 | HL_4FEN_003 | 4FEN | 0.0000 | 0 | B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | |
| 7 | HL_1Y27_003 | 1Y27 | 0.0686 | 0 | X | Purine riboswitch | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | |
| 8 | HL_3RKF_009 | 3RKF | 0.1799 | 0 | C | Guanine riboswitch | A | 59 | C | 60 | U | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | |
| 9 | HL_5KPY_002 | 5KPY | 0.1742 | 0 | A | 5-hydroxytryptophan RNA aptamer | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCUUAAAC | 5 |
| ACCGUAAAU | 3 |
| ACUGUAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUUAAA | 5 |
| CCGUAAA | 3 |
| CUGUAAA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-cSW-R-cSH
- Heat map statistics
- Min 0.07 | Avg 0.22 | Max 0.42
Coloring options: