Motif HL_74026.1 Version HL_74026.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VWW_069 | 1VWW | 0.0000 | -4 | 5 | 28S ribosomal RNA | U | 4972 | U | 4973 | C | 4974 | G | 4975 | A | 4977 | G | 4978 | A | 4979 | C | 4980 | G | 4981 | A | 4982 | C | 4983 | C | 4984 | U | 4985 | G | 4986 | cWW | cwW | ncWw | |
| 2 | HL_3J7A_036 | 3J7A | 0.9335 | 0 | 7 | tRNA | G | 27 | C | 28 | G | 29 | G | 30 | G | 31 | U | 32 | C | 33 | U | 34 | C | 35 | A | 36 | U | 37 | A | 38 | A | 39 | U | 40 | ncWW | ncWWa | cWW | ncWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCUAGCUG | 1 |
| GCGGGUCUCAUAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCUAGCU | 1 |
| CGGGUCUCAUAA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_74026.1 | Only in the child motif |
|---|---|---|---|
| HL_84575.1 Compare | HL_3J7A_036 | HL_1VWW_069 | HL_4W21_069 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.93 | Avg 0.47 | Max 0.93
Coloring options: