Motif HL_74379.3 Version HL_74379.3 of this group appears in releases 3.96 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 3-9 | 4-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8JY0_003 | 8JY0 | 0.0000 | 1 | B | RhoBAST | G | 42 | C | 43 | A | 44 | A | 45 | G | 46 | U | 48 | U | 49 | A | 50 | A | 51 | C | 52 | C | 53 | cWW | csS | cSs |
| 2 | HL_9DXL_003 | 9DXL | 0.3292 | 1 | A | RhoBAST aptamer | G | 26 | C | 27 | A | 28 | A | 29 | G | 30 | U | 32 | U | 33 | A | 34 | A | 35 | C | 36 | C | 37 | cWW | ncsS | ncSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAGGUUAACC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAGGUUAAC | 2 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-cSS-cSS-F-F-F
- Heat map statistics
- Min 0.33 | Avg 0.16 | Max 0.33
Coloring options: