Motif HL_75028.1 Version HL_75028.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5F5F_001 | 5F5F | 0.0000 | 1 | B | RNA (20-mer) | C | 7 | G | 8 | U | 9 | U | 10 | U | 12 | A | 13 | G | 14 | cWW | tsS |
| 2 | HL_9DFE_017 | 9DFE | 0.9351 | 0 | 1A | LSU rRNA | C | 612 | G | 613 | U | 614 | U | 614|||A | G | 614|||B | A | 614|||C | G | 615 | cWW | ntsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUUUUAG | 1 |
| CGUUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUUUA | 1 |
| GUUGA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSS-F-F-F
- Heat map statistics
- Min 0.94 | Avg 0.47 | Max 0.94
Coloring options: