Motif HL_75243.1 Version HL_75243.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J9W_093 | 3J9W | 0.5123 | 0 | GNRA with extra cWW (H) | BA | LSU rRNA | C | 2384 | C | 2385 | U | 2386 | A | 2387 | C | 2388 | A | 2389 | A | 2390 | G | 2391 | cWW | cWW | |
| 2 | HL_5A2Q_024 | 5A2Q | 0.1703 | 2 | Anticodon loop related (H) | 2 | SSU rRNA | A | 1295 | U | 1296 | U | 1297 | G | 1298 | A | 1299 | A | 1301 | C | 1303 | U | 1304 | cWW | ntSH | |
| 3 | HL_4BTS_136 | 4BTS | 0.0000 | 2 | Anticodon loop related (H) | DA | SSU rRNA | A | 1210 | U | 1211 | U | 1212 | G | 1213 | A | 1214 | A | 1216 | C | 1218 | U | 1219 | cWW | ntSH | |
| 4 | HL_4V9F_032 | 4V9F | 0.2839 | 1 | Anticodon loop related | 0 | LSU rRNA | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH |
| 5 | HL_4V9F_038 | 4V9F | 0.9391 | 0 | 0 | LSU rRNA | G | 1557 | C | 1558 | A | 1559 | U | 1560 | U | 1561 | C | 1562 | G | 1563 | C | 1564 | cWW | ncWW | ||
| 6 | HL_4V9F_049 | 4V9F | 0.9514 | 0 | GNRA related | 0 | LSU rRNA | C | 1916 | G | 1917 | U | 1918 | A | 1919 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUACAAG | 1 |
| AUUGAUAGCU | 1 |
| AUUGAGAGCU | 1 |
| ACUCAUACU | 1 |
| GCAUUCGC | 1 |
| CGUACAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUACAA | 1 |
| UUGAUAGC | 1 |
| UUGAGAGC | 1 |
| CUCAUAC | 1 |
| CAUUCG | 1 |
| GUACAA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Anticodon loop related (H) (2)
- GNRA with extra cWW (H) (1)
- Anticodon loop related (1)
- (1)
- GNRA related (1)
- Basepair signature
- cWW-R-tSH-R-R
- Heat map statistics
- Min 0.17 | Avg 0.59 | Max 0.98
Coloring options: