Motif HL_75575.1 Version HL_75575.1 of this group appears in releases 0.6 to 1.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 3-4 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1Y0Q_005 | 1Y0Q | 0.0000 | 0 | A | Group I catalytic intron | C | 146 | A | 147 | A | 148 | G | 149 | U | 150 | G | 151 | cWW | ncsS | |
| 2 | HL_2QBG_053 | 2QBG | 0.8474 | 2 | B | 23S rRNA | A | 2142 | C | 2143 | G | 2144 | C | 2146 | G | 2148 | U | 2149 | cWW | ncSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGUG | 1 |
| ACGCCAGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGU | 1 |
| CGCCAG | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_75575.1 | Only in the parent motif |
|---|---|---|---|
| HL_20857.1 Compare | HL_1Y0Q_005 | HL_2QBG_053 | HL_4A1B_004 |
| HL_27809.1 Compare | HL_2QBG_053 | HL_1Y0Q_005 | HL_1FJG_004 |
Children motifs
| Child motif | Common motif instances | Only in HL_75575.1 | Only in the child motif |
|---|---|---|---|
| HL_74505.1 Compare | HL_2QBG_053 | HL_1Y0Q_005 | HL_1FJG_004 |
| HL_65249.1 Compare | HL_1Y0Q_005 | HL_2QBG_053 | HL_4A1B_004 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.85 | Avg 0.42 | Max 0.85
Coloring options: