Motif HL_75579.1 Version HL_75579.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2Y9H_001 | 2Y9H | 0.2491 | 3 | B | RNA (19-mer) | C | 11 | G | 12 | G | 16 | cWW |
| 2 | HL_3U5H_006 | 3U5H | 0.0964 | 2 | 5 | LSU rRNA | C | 208 | A | 209 | G | 212 | cWW |
| 3 | HL_4A1B_006 | 4A1B | 0.0000 | 2 | 1 | LSU rRNA | C | 208 | A | 209 | G | 212 | cWW |
| 4 | HL_3V2F_011 | 3V2F | 0.1448 | 2 | A | LSU rRNA | C | 319 | A | 320 | G | 323 | cWW |
| 5 | HL_1S72_011 | 1S72 | 0.2883 | 2 | 0 | LSU rRNA | G | 326 | A | 327 | C | 330 | cWW |
| 6 | HL_2ZJR_010 | 2ZJR | 0.3118 | 2 | X | LSU rRNA | C | 330 | U | 331 | G | 334 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCGUG | 1 |
| CAUAG | 1 |
| CAAAG | 1 |
| CAGAG | 1 |
| GAUAC | 1 |
| CUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA | 2 |
| GCGU | 1 |
| AAA | 1 |
| AGA | 1 |
| UCA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_75579.1 | Only in the parent motif |
|---|---|---|---|
| HL_07042.1 Compare | HL_1S72_011, HL_2ZJR_010 | HL_3V2F_011, HL_2Y9H_001, HL_3U5H_006, HL_4A1B_006 | HL_2QBG_012, HL_3PYO_011, HL_3O58_077 |
Children motifs
| Child motif | Common motif instances | Only in HL_75579.1 | Only in the child motif |
|---|---|---|---|
| HL_75579.2 Compare | HL_3V2F_011, HL_2Y9H_001, HL_3U5H_006, HL_1S72_011, HL_4A1B_006 | HL_2ZJR_010 | HL_4IOA_010 |
Coloring options: