Motif HL_75660.3 Version HL_75660.3 of this group appears in releases 3.93 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8K0Y_001 | 8K0Y | 0.2047 | 3 | A | RNA (56-MER) | G | 10 | G | 11 | C | 15 | cWW |
| 2 | HL_2ZNI_001 | 2ZNI | 0.2331 | 4 | C | bacterial tRNA | C | 13 | G | 14 | G | 21 | cWW |
| 3 | HL_5J7L_143 | 5J7L | 0.1798 | 2 | DA | LSU rRNA | G | 319 | A | 320 | C | 323 | cWW |
| 4 | HL_9DFE_010 | 9DFE | 0.1756 | 2 | 1A | LSU rRNA | C | 319 | A | 320 | G | 323 | cWW |
| 5 | HL_4WF9_011 | 4WF9 | 0.1719 | 2 | X | LSU rRNA | C | 362 | A | 363 | G | 366 | cWW |
| 6 | HL_7A0S_011 | 7A0S | 0.2109 | 2 | X | LSU rRNA | C | 330 | U | 331 | G | 334 | cWW |
| 7 | HL_4V9F_011 | 4V9F | 0.1516 | 2 | 0 | LSU rRNA | G | 326 | A | 327 | C | 330 | cWW |
| 8 | HL_8P9A_118 | 8P9A | 0.1259 | 2 | AR | LSU rRNA | C | 208 | A | 209 | G | 212 | cWW |
| 9 | HL_7KI3_001 | 7KI3 | 0.1587 | 3 | C | HCV genotype 1a miR-122 site-1 | C | 10 | U | 11 | G | 15 | cWW |
| 10 | HL_8G9Z_001 | 8G9Z | 0.0000 | 3 | E | Selenocysteine transfer RNA | G | 15||A | U | 16||A | C | 20||A|A | cWW |
| 11 | HL_4WF9_003 | 4WF9 | 0.1171 | 3 | X | LSU rRNA | G | 122 | G | 123 | C | 127 | cWW |
| 12 | HL_5U3G_001 | 5U3G | 0.1424 | 3 | B | Guanidine-I riboswitch | C | 18 | G | 19 | G | 23 | cWW |
| 13 | HL_1WZ2_007 | 1WZ2 | 0.1694 | 3 | D | tRNA | C | 950 | G | 951 | G | 955 | cWW |
| 14 | HL_2Y9H_003 | 2Y9H | 0.1539 | 3 | F | RNA (19-mer) | C | 11 | G | 12 | G | 16 | cWW |
| 15 | HL_4V9F_003 | 4V9F | 0.3092 | 2 | 0 | LSU rRNA | G | 118 | A | 119 | C | 122 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAC | 2 |
| GGUGGC | 1 |
| CGAAUAG | 1 |
| CAGAG | 1 |
| CAAAG | 1 |
| CUCAG | 1 |
| CAUAG | 1 |
| CUGAUG | 1 |
| GUGGUC | 1 |
| GGAAAC | 1 |
| CGAAAG | 1 |
| CGUAGG | 1 |
| CGCGUG | 1 |
| GAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA | 3 |
| GAAA | 2 |
| GUGG | 1 |
| GAAUA | 1 |
| AGA | 1 |
| AAA | 1 |
| UCA | 1 |
| UGAU | 1 |
| UGGU | 1 |
| GUAG | 1 |
| GCGU | 1 |
| AAU | 1 |
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