RNA 3D Hub //

Motif HL_75660.3 Version HL_75660.3 of this group appears in releases 3.93 to 3.94

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 31-3
1 HL_8K0Y_0018K0Y0.20473AMALAT1-associated small cytoplasmic RNA/MEN beta RNAG10G11C15cWW
2 HL_2ZNI_0012ZNI0.23314Cbacterial tRNAC13G14G21cWW
3 HL_5J7L_1435J7L0.17982DA LSU rRNAG319A320C323cWW
4 HL_9DFE_0109DFE0.175621A LSU rRNAC319A320G323cWW
5 HL_4WF9_0114WF90.17192X LSU rRNAC362A363G366cWW
6 HL_7A0S_0117A0S0.21092X LSU rRNAC330U331G334cWW
7 HL_4V9F_0114V9F0.151620 LSU rRNAG326A327C330cWW
8 HL_8P9A_1188P9A0.12592AR LSU rRNAC208A209G212cWW
9 HL_7KI3_0017KI30.15873CHCV genotype 1a miR-122 site-1C10U11G15cWW
10 HL_8G9Z_0018G9Z0.00003ESelenocysteine transfer RNAG15||AU16||AC20||A|AcWW
11 HL_4WF9_0034WF90.11713X LSU rRNAG122G123C127cWW
12 HL_5U3G_0015U3G0.14243BGuanidine-I riboswitchC18G19G23cWW
13 HL_1WZ2_0071WZ20.16943DtRNAC950G951G955cWW
14 HL_2Y9H_0032Y9H0.15393FRNA (19-mer)C11G12G16cWW
15 HL_4V9F_0034V9F0.309220 LSU rRNAG118A119C122cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUAC2
GGUGGC1
CGAAUAG1
CAGAG1
CAAAG1
CUCAG1
CAUAG1
CUGAUG1
GUGGUC1
GGAAAC1
CGAAAG1
CGUAGG1
CGCGUG1
GAAUC1
Non-Watson-Crick part of the motif
SequenceCounts
AUA3
GAAA2
GUGG1
GAAUA1
AGA1
AAA1
UCA1
UGAU1
UGGU1
GUAG1
GCGU1
AAU1

Release history

Release3.933.94
Date2025-01-292025-02-26
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (15)
    • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.08 | Avg 0.20 | Max 0.51
    Help

    Coloring options:

    HL_8K0Y_001:HL_8K0Y_001 = 0HL_8K0Y_001:HL_2ZNI_001 = 0.1214HL_8K0Y_001:HL_5J7L_143 = 0.1136HL_8K0Y_001:HL_9DFE_010 = 0.1463HL_8K0Y_001:HL_4WF9_011 = 0.1769HL_8K0Y_001:HL_7A0S_011 = 0.1751HL_8K0Y_001:HL_4V9F_011 = 0.1944HL_8K0Y_001:HL_8P9A_118 = 0.1996HL_8K0Y_001:HL_7KI3_001 = 0.3138HL_8K0Y_001:HL_8G9Z_001 = 0.2047HL_8K0Y_001:HL_4WF9_003 = 0.1483HL_8K0Y_001:HL_5U3G_001 = 0.1815HL_8K0Y_001:HL_1WZ2_007 = 0.2965HL_8K0Y_001:HL_2Y9H_003 = 0.3086HL_8K0Y_001:HL_4V9F_003 = 0.4701HL_2ZNI_001:HL_8K0Y_001 = 0.1214HL_2ZNI_001:HL_2ZNI_001 = 0HL_2ZNI_001:HL_5J7L_143 = 0.1088HL_2ZNI_001:HL_9DFE_010 = 0.1262HL_2ZNI_001:HL_4WF9_011 = 0.1778HL_2ZNI_001:HL_7A0S_011 = 0.1631HL_2ZNI_001:HL_4V9F_011 = 0.2017HL_2ZNI_001:HL_8P9A_118 = 0.2016HL_2ZNI_001:HL_7KI3_001 = 0.311HL_2ZNI_001:HL_8G9Z_001 = 0.2331HL_2ZNI_001:HL_4WF9_003 = 0.2221HL_2ZNI_001:HL_5U3G_001 = 0.2064HL_2ZNI_001:HL_1WZ2_007 = 0.3482HL_2ZNI_001:HL_2Y9H_003 = 0.351HL_2ZNI_001:HL_4V9F_003 = 0.511HL_5J7L_143:HL_8K0Y_001 = 0.1136HL_5J7L_143:HL_2ZNI_001 = 0.1088HL_5J7L_143:HL_5J7L_143 = 0HL_5J7L_143:HL_9DFE_010 = 0.0819HL_5J7L_143:HL_4WF9_011 = 0.1165HL_5J7L_143:HL_7A0S_011 = 0.1071HL_5J7L_143:HL_4V9F_011 = 0.1117HL_5J7L_143:HL_8P9A_118 = 0.1242HL_5J7L_143:HL_7KI3_001 = 0.2604HL_5J7L_143:HL_8G9Z_001 = 0.1798HL_5J7L_143:HL_4WF9_003 = 0.1666HL_5J7L_143:HL_5U3G_001 = 0.1647HL_5J7L_143:HL_1WZ2_007 = 0.2914HL_5J7L_143:HL_2Y9H_003 = 0.2936HL_5J7L_143:HL_4V9F_003 = 0.4519HL_9DFE_010:HL_8K0Y_001 = 0.1463HL_9DFE_010:HL_2ZNI_001 = 0.1262HL_9DFE_010:HL_5J7L_143 = 0.0819HL_9DFE_010:HL_9DFE_010 = 0HL_9DFE_010:HL_4WF9_011 = 0.1129HL_9DFE_010:HL_7A0S_011 = 0.1469HL_9DFE_010:HL_4V9F_011 = 0.1474HL_9DFE_010:HL_8P9A_118 = 0.1551HL_9DFE_010:HL_7KI3_001 = 0.2324HL_9DFE_010:HL_8G9Z_001 = 0.1756HL_9DFE_010:HL_4WF9_003 = 0.1739HL_9DFE_010:HL_5U3G_001 = 0.1787HL_9DFE_010:HL_1WZ2_007 = 0.2991HL_9DFE_010:HL_2Y9H_003 = 0.2765HL_9DFE_010:HL_4V9F_003 = 0.4367HL_4WF9_011:HL_8K0Y_001 = 0.1769HL_4WF9_011:HL_2ZNI_001 = 0.1778HL_4WF9_011:HL_5J7L_143 = 0.1165HL_4WF9_011:HL_9DFE_010 = 0.1129HL_4WF9_011:HL_4WF9_011 = 0HL_4WF9_011:HL_7A0S_011 = 0.1442HL_4WF9_011:HL_4V9F_011 = 0.1224HL_4WF9_011:HL_8P9A_118 = 0.1462HL_4WF9_011:HL_7KI3_001 = 0.24HL_4WF9_011:HL_8G9Z_001 = 0.1719HL_4WF9_011:HL_4WF9_003 = 0.1909HL_4WF9_011:HL_5U3G_001 = 0.2133HL_4WF9_011:HL_1WZ2_007 = 0.304HL_4WF9_011:HL_2Y9H_003 = 0.3HL_4WF9_011:HL_4V9F_003 = 0.4557HL_7A0S_011:HL_8K0Y_001 = 0.1751HL_7A0S_011:HL_2ZNI_001 = 0.1631HL_7A0S_011:HL_5J7L_143 = 0.1071HL_7A0S_011:HL_9DFE_010 = 0.1469HL_7A0S_011:HL_4WF9_011 = 0.1442HL_7A0S_011:HL_7A0S_011 = 0HL_7A0S_011:HL_4V9F_011 = 0.1013HL_7A0S_011:HL_8P9A_118 = 0.1485HL_7A0S_011:HL_7KI3_001 = 0.2695HL_7A0S_011:HL_8G9Z_001 = 0.2109HL_7A0S_011:HL_4WF9_003 = 0.2221HL_7A0S_011:HL_5U3G_001 = 0.1948HL_7A0S_011:HL_1WZ2_007 = 0.3303HL_7A0S_011:HL_2Y9H_003 = 0.3285HL_7A0S_011:HL_4V9F_003 = 0.4778HL_4V9F_011:HL_8K0Y_001 = 0.1944HL_4V9F_011:HL_2ZNI_001 = 0.2017HL_4V9F_011:HL_5J7L_143 = 0.1117HL_4V9F_011:HL_9DFE_010 = 0.1474HL_4V9F_011:HL_4WF9_011 = 0.1224HL_4V9F_011:HL_7A0S_011 = 0.1013HL_4V9F_011:HL_4V9F_011 = 0HL_4V9F_011:HL_8P9A_118 = 0.0841HL_4V9F_011:HL_7KI3_001 = 0.2208HL_4V9F_011:HL_8G9Z_001 = 0.1516HL_4V9F_011:HL_4WF9_003 = 0.1822HL_4V9F_011:HL_5U3G_001 = 0.1767HL_4V9F_011:HL_1WZ2_007 = 0.2702HL_4V9F_011:HL_2Y9H_003 = 0.2676HL_4V9F_011:HL_4V9F_003 = 0.4105HL_8P9A_118:HL_8K0Y_001 = 0.1996HL_8P9A_118:HL_2ZNI_001 = 0.2016HL_8P9A_118:HL_5J7L_143 = 0.1242HL_8P9A_118:HL_9DFE_010 = 0.1551HL_8P9A_118:HL_4WF9_011 = 0.1462HL_8P9A_118:HL_7A0S_011 = 0.1485HL_8P9A_118:HL_4V9F_011 = 0.0841HL_8P9A_118:HL_8P9A_118 = 0HL_8P9A_118:HL_7KI3_001 = 0.1972HL_8P9A_118:HL_8G9Z_001 = 0.1259HL_8P9A_118:HL_4WF9_003 = 0.1643HL_8P9A_118:HL_5U3G_001 = 0.1437HL_8P9A_118:HL_1WZ2_007 = 0.2185HL_8P9A_118:HL_2Y9H_003 = 0.2299HL_8P9A_118:HL_4V9F_003 = 0.37HL_7KI3_001:HL_8K0Y_001 = 0.3138HL_7KI3_001:HL_2ZNI_001 = 0.311HL_7KI3_001:HL_5J7L_143 = 0.2604HL_7KI3_001:HL_9DFE_010 = 0.2324HL_7KI3_001:HL_4WF9_011 = 0.24HL_7KI3_001:HL_7A0S_011 = 0.2695HL_7KI3_001:HL_4V9F_011 = 0.2208HL_7KI3_001:HL_8P9A_118 = 0.1972HL_7KI3_001:HL_7KI3_001 = 0HL_7KI3_001:HL_8G9Z_001 = 0.1587HL_7KI3_001:HL_4WF9_003 = 0.2342HL_7KI3_001:HL_5U3G_001 = 0.2019HL_7KI3_001:HL_1WZ2_007 = 0.2326HL_7KI3_001:HL_2Y9H_003 = 0.1796HL_7KI3_001:HL_4V9F_003 = 0.3051HL_8G9Z_001:HL_8K0Y_001 = 0.2047HL_8G9Z_001:HL_2ZNI_001 = 0.2331HL_8G9Z_001:HL_5J7L_143 = 0.1798HL_8G9Z_001:HL_9DFE_010 = 0.1756HL_8G9Z_001:HL_4WF9_011 = 0.1719HL_8G9Z_001:HL_7A0S_011 = 0.2109HL_8G9Z_001:HL_4V9F_011 = 0.1516HL_8G9Z_001:HL_8P9A_118 = 0.1259HL_8G9Z_001:HL_7KI3_001 = 0.1587HL_8G9Z_001:HL_8G9Z_001 = 0HL_8G9Z_001:HL_4WF9_003 = 0.1171HL_8G9Z_001:HL_5U3G_001 = 0.1424HL_8G9Z_001:HL_1WZ2_007 = 0.1694HL_8G9Z_001:HL_2Y9H_003 = 0.1539HL_8G9Z_001:HL_4V9F_003 = 0.3092HL_4WF9_003:HL_8K0Y_001 = 0.1483HL_4WF9_003:HL_2ZNI_001 = 0.2221HL_4WF9_003:HL_5J7L_143 = 0.1666HL_4WF9_003:HL_9DFE_010 = 0.1739HL_4WF9_003:HL_4WF9_011 = 0.1909HL_4WF9_003:HL_7A0S_011 = 0.2221HL_4WF9_003:HL_4V9F_011 = 0.1822HL_4WF9_003:HL_8P9A_118 = 0.1643HL_4WF9_003:HL_7KI3_001 = 0.2342HL_4WF9_003:HL_8G9Z_001 = 0.1171HL_4WF9_003:HL_4WF9_003 = 0HL_4WF9_003:HL_5U3G_001 = 0.1246HL_4WF9_003:HL_1WZ2_007 = 0.1691HL_4WF9_003:HL_2Y9H_003 = 0.1777HL_4WF9_003:HL_4V9F_003 = 0.339HL_5U3G_001:HL_8K0Y_001 = 0.1815HL_5U3G_001:HL_2ZNI_001 = 0.2064HL_5U3G_001:HL_5J7L_143 = 0.1647HL_5U3G_001:HL_9DFE_010 = 0.1787HL_5U3G_001:HL_4WF9_011 = 0.2133HL_5U3G_001:HL_7A0S_011 = 0.1948HL_5U3G_001:HL_4V9F_011 = 0.1767HL_5U3G_001:HL_8P9A_118 = 0.1437HL_5U3G_001:HL_7KI3_001 = 0.2019HL_5U3G_001:HL_8G9Z_001 = 0.1424HL_5U3G_001:HL_4WF9_003 = 0.1246HL_5U3G_001:HL_5U3G_001 = 0HL_5U3G_001:HL_1WZ2_007 = 0.1785HL_5U3G_001:HL_2Y9H_003 = 0.1995HL_5U3G_001:HL_4V9F_003 = 0.3555HL_1WZ2_007:HL_8K0Y_001 = 0.2965HL_1WZ2_007:HL_2ZNI_001 = 0.3482HL_1WZ2_007:HL_5J7L_143 = 0.2914HL_1WZ2_007:HL_9DFE_010 = 0.2991HL_1WZ2_007:HL_4WF9_011 = 0.304HL_1WZ2_007:HL_7A0S_011 = 0.3303HL_1WZ2_007:HL_4V9F_011 = 0.2702HL_1WZ2_007:HL_8P9A_118 = 0.2185HL_1WZ2_007:HL_7KI3_001 = 0.2326HL_1WZ2_007:HL_8G9Z_001 = 0.1694HL_1WZ2_007:HL_4WF9_003 = 0.1691HL_1WZ2_007:HL_5U3G_001 = 0.1785HL_1WZ2_007:HL_1WZ2_007 = 0HL_1WZ2_007:HL_2Y9H_003 = 0.1192HL_1WZ2_007:HL_4V9F_003 = 0.2256HL_2Y9H_003:HL_8K0Y_001 = 0.3086HL_2Y9H_003:HL_2ZNI_001 = 0.351HL_2Y9H_003:HL_5J7L_143 = 0.2936HL_2Y9H_003:HL_9DFE_010 = 0.2765HL_2Y9H_003:HL_4WF9_011 = 0.3HL_2Y9H_003:HL_7A0S_011 = 0.3285HL_2Y9H_003:HL_4V9F_011 = 0.2676HL_2Y9H_003:HL_8P9A_118 = 0.2299HL_2Y9H_003:HL_7KI3_001 = 0.1796HL_2Y9H_003:HL_8G9Z_001 = 0.1539HL_2Y9H_003:HL_4WF9_003 = 0.1777HL_2Y9H_003:HL_5U3G_001 = 0.1995HL_2Y9H_003:HL_1WZ2_007 = 0.1192HL_2Y9H_003:HL_2Y9H_003 = 0HL_2Y9H_003:HL_4V9F_003 = 0.1734HL_4V9F_003:HL_8K0Y_001 = 0.4701HL_4V9F_003:HL_2ZNI_001 = 0.511HL_4V9F_003:HL_5J7L_143 = 0.4519HL_4V9F_003:HL_9DFE_010 = 0.4367HL_4V9F_003:HL_4WF9_011 = 0.4557HL_4V9F_003:HL_7A0S_011 = 0.4778HL_4V9F_003:HL_4V9F_011 = 0.4105HL_4V9F_003:HL_8P9A_118 = 0.37HL_4V9F_003:HL_7KI3_001 = 0.3051HL_4V9F_003:HL_8G9Z_001 = 0.3092HL_4V9F_003:HL_4WF9_003 = 0.339HL_4V9F_003:HL_5U3G_001 = 0.3555HL_4V9F_003:HL_1WZ2_007 = 0.2256HL_4V9F_003:HL_2Y9H_003 = 0.1734HL_4V9F_003:HL_4V9F_003 = 0HL_8K0Y_001HL_2ZNI_001HL_5J7L_143HL_9DFE_010HL_4WF9_011HL_7A0S_011HL_4V9F_011HL_8P9A_118HL_7KI3_001HL_8G9Z_001HL_4WF9_003HL_5U3G_001HL_1WZ2_007HL_2Y9H_003HL_4V9F_003Discrepancy0.000.100.200.300.400.50
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