RNA 3D Hub //

Hairpin Loop Motif Atlas Release 3.93

Polymorphs
#Varna 2DMotifNum NtsInstances
1
  • HL_37824.4
HL_37824.4
  • Basepair signature: cWW-F-F-F-F
  • History status: Updated, 1 parent
  • GNRA (284)
  • GNRA variation (11)
  • GNRA with GA tSW pair (4)
  • GNRA related (2)
    		• 6301
    2
    • HL_28252.3
    		HL_28252.3
    • Basepair signature: cWW-tWH-F-F-F-F-F
    • History status: Updated, 1 parent
  • T-loop with 2 stacked bulged bases (140)
  • T-loop related (2)
  • T-loop with 2 bulged bases not stacked (1)
    		• 9143
    3
    • HL_34617.3
    		HL_34617.3
    • Basepair signature: cWW-tSW-F
    • History status: Updated, 1 parent
  • UNCG (50)
  • UNCG variation (2)
    		• 554
    4
    • HL_06059.2
    		HL_06059.2
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
  • tRNA anticodon loop (41)
  • Anticodon loop related (5)
    		• 947
    5
    • HL_46878.1
    		HL_46878.1
    • Basepair signature: cWW-F
    • History status: Exact match
  • Mini UNCG (28)
  • Mini UNCG with extended bulge (2)
    		• 330
    6
    • HL_48417.3
    		HL_48417.3
    • Basepair signature: cWW-F-F
    • History status: Updated, 1 parent
    		423
    7
    • HL_93324.2
    		HL_93324.2
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (23)
    		• 823
    8
    • HL_77436.3
    		HL_77436.3
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
  • T-loop related (13)
  • tRNA anticodon loop (4)
  • Other HL (2)
  • T-loop with 1 bulged base (2)
  • T-loop (1)
    		• 722
    9
    • HL_22584.4
    		HL_22584.4
    • Basepair signature: cWW-tSW-F
    • History status: Exact match
  • Fab BL3-6 binding hairpin with tSW (18)
  • Other HL (3)
    		• 521
    10
    • HL_33074.3
    		HL_33074.3
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
  • U1 small nuclear ribonucleoprotein A binding hairpin (19)
    		• 1019
    11
    • HL_01609.2
    		HL_01609.2
    • Basepair signature: cWW-tWH-F-F-F
    • History status: Updated, 1 parent
  • T-loop with 2 bulged bases not stacked (8)
  • T-loop with 2 stacked bulged bases (5)
  • T-loop with 1 bulged base (1)
    		• 717
    12
    • HL_20811.2
    		HL_20811.2
    • Basepair signature: cWW-cWS-F
    • History status: Exact match
  • tRNA D-loop (16)
  • Other HL (1)
    		• 517
    13
    • HL_31585.2
    		HL_31585.2
    • Basepair signature: cWW-F-F-F
    • History status: Updated, 1 parent
    		517
    14
    • HL_56334.1
    		HL_56334.1
    • Basepair signature: cWW-F
    • History status: Exact match
  • Mini UNCG (14)
  • Mini UNCG related (2)
    		• 316
    15
    • HL_75660.3
    		HL_75660.3
    • Basepair signature: cWW-F
    • History status: Updated, 1 parent
    		315
    16
    • HL_81538.1
    		HL_81538.1
    • Basepair signature: cWW-tSH-F-F-F-F
    • History status: Exact match
  • GNRA wlth tandem sheared (10)
  • GNRA related (1)
  • Anticodon loop related (1)
    		• 815
    17
    • HL_30680.2
    		HL_30680.2
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (13)
    		• 714
    18
    • HL_75293.3
    		HL_75293.3
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		1013
    19
    • HL_57176.1
    		HL_57176.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • Pseudoknot geometry with 3' bulge (9)
    		• 513
    20
    • HL_30068.1
    		HL_30068.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
  • GNRA (1)
    		• 613
    21
    • HL_53890.1
    		HL_53890.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • UNCG variation (1)
  • GNRA related (1)
    		• 513
    22
    • HL_27670.1
    		HL_27670.1
    • Basepair signature: cWW-tWH-F-F
    • History status: Exact match
  • T-loop with unstacked turn (10)
    		• 612
    23
    • HL_66853.6
    		HL_66853.6
    • Basepair signature: cWW-F-F-F-cSH
    • History status: Exact match
    		712
    24
    • HL_65794.3
    		HL_65794.3
    • Basepair signature: cWW-F-F-F-F
    • History status: Updated, 2 parents
  • Pseudoknot geometry (5)
  • Ribsomal LSU H95 (4)
    		• 611
    25
    • HL_73266.7
    		HL_73266.7
    • Basepair signature: cWW-cWW-cSW-cSH-F-F-F
    • History status: Exact match
    		911
    26
    • HL_84299.1
    		HL_84299.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
  • GNRA related (4)
  • T-loop related (1)
    		• 810
    27
    • HL_85367.1
    		HL_85367.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		810
    28
    • HL_49922.2
    		HL_49922.2
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		510
    29
    • HL_77600.1
    		HL_77600.1
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (3)
    		• 910
    30
    • HL_47787.1
    		HL_47787.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		610
    31
    • HL_32346.2
    		HL_32346.2
    • Basepair signature: cWW-F
    • History status: Updated, 1 parent
    		39
    32
    • HL_80709.1
    		HL_80709.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		59
    33
    • HL_67407.2
    		HL_67407.2
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		109
    34
    • HL_04783.2
    		HL_04783.2
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • GNRA related (3)
    		• 59
    35
    • HL_02837.1
    		HL_02837.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
  • GNRA variation (6)
    		• 69
    36
    • HL_20167.1
    		HL_20167.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
  • T-loop related (1)
  • GNRA with extra cWW (1)
    		• 89
    37
    • HL_37369.1
    		HL_37369.1
    • Basepair signature: cWW-tSH-F-F-F
    • History status: Exact match
    		78
    38
    • HL_52953.2
    		HL_52953.2
    • Basepair signature: cWW-F-F-F-F
    • History status: Updated, 2 parents
    		68
    39
    • HL_04171.6
    		HL_04171.6
    • Basepair signature: cWW-cWW-F-F-F-F-F-F
    • History status: Exact match
    		108
    40
    • HL_23696.2
    		HL_23696.2
    • Basepair signature: cWW-F-F
    • History status: Exact match
  • UNCG variation (1)
    		• 48
    41
    • HL_93616.2
    		HL_93616.2
    • Basepair signature: cWW-cWS-F-F-F-F
    • History status: Exact match
  • tRNA D-loop (7)
    		• 88
    42
    • HL_78347.3
    		HL_78347.3
    • Basepair signature: cWW-F-F-tSW
    • History status: Exact match
    		68
    43
    • HL_36684.3
    		HL_36684.3
    • Basepair signature: cWW-F-F-F-F-cWW-F-F-F
    • History status: Exact match
    		118
    44
    • HL_64690.5
    		HL_64690.5
    • Basepair signature: cWW-cSW-F-F-F-F
    • History status: Exact match
    		88
    45
    • HL_91939.1
    		HL_91939.1
    • Basepair signature: cWW-tSH-tHH-tWW-F-F-F
    • History status: Exact match
    		117
    46
    • HL_20743.5
    		HL_20743.5
    • Basepair signature: cWW-cWW-F-F-F-F
    • History status: Exact match
    		87
    47
    • HL_10453.1
    		HL_10453.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
  • tRNA anticodon loop (3)
  • GNRA related (1)
    		• 77
    48
    • HL_89567.1
    		HL_89567.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		67
    49
    • HL_40252.2
    		HL_40252.2
    • Basepair signature: cWW-cWS-tHS-F
    • History status: Exact match
    		77
    50
    • HL_87954.2
    		HL_87954.2
    • Basepair signature: cWW-tSW-F
    • History status: Exact match
    		57
    51
    • HL_56131.1
    		HL_56131.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		46
    52
    • HL_88205.1
    		HL_88205.1
    • Basepair signature: cWW-cWS-tSW-F-F
    • History status: Exact match
    		76
    53
    • HL_09967.2
    		HL_09967.2
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
  • tRNA anticodon loop (2)
  • Anticodon loop related (2)
  • Pseudoknot geometry (1)
  • Pseudoknot (1)
    		• 86
    54
    • HL_32735.1
    		HL_32735.1
    • Basepair signature: cWW-tSH-F-F-F-F-F
    • History status: Exact match
    		96
    55
    • HL_42998.1
    		HL_42998.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		86
    56
    • HL_61996.1
    		HL_61996.1
    • Basepair signature: cWW-tWH-F-F-F
    • History status: Exact match
    		76
    57
    • HL_04259.1
    		HL_04259.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
  • GNRA with extra cWW (2)
  • GNRA related (1)
  • tRNA anticodon loop (1)
  • GNRA with near cWW (1)
    		• 86
    58
    • HL_45127.1
    		HL_45127.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • Other HL (1)
    		• 56
    59
    • HL_38901.1
    		HL_38901.1
    • Basepair signature: cWW-F-cSH
    • History status: Exact match
  • tRNA D-loop (4)
    		• 56
    60
    • HL_81545.1
    		HL_81545.1
    • Basepair signature: cWW-tWH-F-F-F-F
    • History status: Exact match
    		86
    61
    • HL_99769.2
    		HL_99769.2
    • Basepair signature: cWW-cWW-F-F-F-F
    • History status: Exact match
    		86
    62
    • HL_35677.2
    		HL_35677.2
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot with intercalation (3)
    		• 96
    63
    • HL_39454.1
    		HL_39454.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		76
    64
    • HL_55195.3
    		HL_55195.3
    • Basepair signature: cWW-F
    • History status: Exact match
    		36
    65
    • HL_83632.1
    		HL_83632.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
  • tRNA anticodon loop (4)
    		• 86
    66
    • HL_19210.2
    		HL_19210.2
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		106
    67
    • HL_97756.2
    		HL_97756.2
    • Basepair signature: cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
    • History status: Exact match
    		146
    68
    • HL_74055.1
    		HL_74055.1
    • Basepair signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW
    • History status: Exact match
    		136
    69
    • HL_50860.1
    		HL_50860.1
    • Basepair signature: cWW-F-cWH-F-F-F-F
    • History status: Exact match
    		95
    70
    • HL_13963.2
    		HL_13963.2
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		45
    71
    • HL_42046.2
    		HL_42046.2
    • Basepair signature: cWW-tSS-F-F-F
    • History status: Exact match
    		75
    72
    • HL_06226.2
    		HL_06226.2
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		105
    73
    • HL_20554.2
    		HL_20554.2
    • Basepair signature: cWW-tWH-F-F-F
    • History status: Exact match
    		75
    74
    • HL_07886.1
    		HL_07886.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		55
    75
    • HL_38649.1
    		HL_38649.1
    • Basepair signature: cWW-tSH-F-F-F-F-F-F
    • History status: Exact match
    		105
    76
    • HL_23827.3
    		HL_23827.3
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		85
    77
    • HL_53454.1
    		HL_53454.1
    • Basepair signature: cWW-tSH-F-F-F-F-F
    • History status: Exact match
    		95
    78
    • HL_93438.1
    		HL_93438.1
    • Basepair signature: cWW-F-F-F-F-F-cSH-F
    • History status: Exact match
  • Pseudoknot with intercalation (3)
    		• 105
    79
    • HL_01962.1
    		HL_01962.1
    • Basepair signature: cWW-tWH-tWH-F
    • History status: Exact match
    		75
    80
    • HL_45175.1
    		HL_45175.1
    • Basepair signature: cWW-cWS-F-F
    • History status: Exact match
  • tRNA D-loop (4)
    		• 65
    81
    • HL_89881.3
    		HL_89881.3
    • Basepair signature: cWW-tHW-F-F-F-F-F-F
    • History status: Exact match
    		105
    82
    • HL_94239.1
    		HL_94239.1
    • Basepair signature: cWW-F
    • History status: Exact match
    		35
    83
    • HL_86769.4
    		HL_86769.4
    • Basepair signature: cWW-cWW-cSH-F
    • History status: Exact match
    		75
    84
    • HL_50779.2
    		HL_50779.2
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
    		95
    85
    • HL_41019.2
    		HL_41019.2
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
  • Anticodon loop related (1)
    		• 105
    86
    • HL_05304.2
    		HL_05304.2
    • Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F
    • History status: Exact match
    		135
    87
    • HL_10446.1
    		HL_10446.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		44
    88
    • HL_98864.1
    		HL_98864.1
    • Basepair signature: cWW-tWH-F-F-F-F-F-F
    • History status: Exact match
  • T-loop with unstacked turn (4)
    		• 104
    89
    • HL_89199.1
    		HL_89199.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • Mini UNCG (4)
    		• 54
    90
    • HL_38808.1
    		HL_38808.1
    • Basepair signature: cWW-cWW
    • History status: Exact match
    		44
    91
    • HL_07951.1
    		HL_07951.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
  • tRNA D-loop (1)
    		• 44
    92
    • HL_49941.1
    		HL_49941.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
  • tRNA D-loop (1)
    		• 74
    93
    • HL_82710.2
    		HL_82710.2
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		54
    94
    • HL_50537.6
    		HL_50537.6
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • D-loop related (1)
    		• 54
    95
    • HL_86877.1
    		HL_86877.1
    • Basepair signature: cWW-cSH-F-F-F-F-F-F
    • History status: Exact match
    		94
    96
    • HL_09260.1
    		HL_09260.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
  • tRNA D-loop (2)
    		• 64
    97
    • HL_55436.1
    		HL_55436.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (1)
    		• 104
    98
    • HL_02887.2
    		HL_02887.2
    • Basepair signature: cWW-tWH-F-F-F-F-F-F
    • History status: Exact match
  • T-loop with 3 stacked bulged bases (3)
    		• 103
    99
    • HL_41464.1
    		HL_41464.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		83
    100
    • HL_97917.2
    		HL_97917.2
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		63
    101
    • HL_03273.2
    		HL_03273.2
    • Basepair signature: cWW-F-F-tWH-F-F-F
    • History status: Exact match
    		93
    102
    • HL_70782.1
    		HL_70782.1
    • Basepair signature: cWW
    • History status: Exact match
    		23
    103
    • HL_74379.2
    		HL_74379.2
    • Basepair signature: cWW-F-F-cSS-cSS-F
    • History status: Exact match
    		93
    104
    • HL_88364.2
    		HL_88364.2
    • Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		153
    105
    • HL_80922.2
    		HL_80922.2
    • Basepair signature: cWW-tSH-F
    • History status: Exact match
    		53
    106
    • HL_07480.1
    		HL_07480.1
    • Basepair signature: cWW-tSH-F-F-F
    • History status: Exact match
    		73
    107
    • HL_81100.2
    		HL_81100.2
    • Basepair signature: cWW
    • History status: Exact match
    		23
    108
    • HL_20751.2
    		HL_20751.2
    • Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		133
    109
    • HL_49687.1
    		HL_49687.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		53
    110
    • HL_81205.2
    		HL_81205.2
    • Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F
    • History status: Exact match
    		143
    111
    • HL_67667.2
    		HL_67667.2
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		43
    112
    • HL_04642.1
    		HL_04642.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
  • tRNA D-loop (1)
    		• 73
    113
    • HL_86109.1
    		HL_86109.1
    • Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F
    • History status: Exact match
    		123
    114
    • HL_73247.1
    		HL_73247.1
    • Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (3)
    		• 153
    115
    • HL_12758.2
    		HL_12758.2
    • Basepair signature: cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH
    • History status: Exact match
  • G-quadruplex (3)
    		• 223
    116
    • HL_68572.1
    		HL_68572.1
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
    		93
    117
    • HL_94376.1
    		HL_94376.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry (2)
    		• 113
    118
    • HL_68767.1
    		HL_68767.1
    • Basepair signature: cWW-cWS-tSH-cWS-F
    • History status: Exact match
  • tRNA D-loop (3)
    		• 83
    119
    • HL_31581.6
    		HL_31581.6
    • Basepair signature: cWW-cHS-F-F-F-cWW-F-F-F
    • History status: Exact match
    		113
    120
    • HL_91503.7
    		HL_91503.7
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
    		93
    121
    • HL_09452.1
    		HL_09452.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		53
    122
    • HL_20535.1
    		HL_20535.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		62
    123
    • HL_60340.1
    		HL_60340.1
    • Basepair signature: cWW-F-F-F
    • History status: New id, 1 parent
    		52
    124
    • HL_22622.1
    		HL_22622.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
  • Mini UNCG with extended bulge (1)
    		• 62
    125
    • HL_03333.1
    		HL_03333.1
    • Basepair signature: cWW-F-F-F-cSH-F
    • History status: Exact match
    		82
    126
    • HL_70802.1
    		HL_70802.1
    • Basepair signature: cWW-cWS-F
    • History status: Exact match
  • D-loop related (1)
    		• 42
    127
    • HL_60938.1
    		HL_60938.1
    • Basepair signature: cWW-cWW-F-F-F-F-F-F
    • History status: Exact match
    		122
    128
    • HL_71391.1
    		HL_71391.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		62
    129
    • HL_98870.1
    		HL_98870.1
    • Basepair signature: cWW-tSH-tWW-F-F-F-F-F
    • History status: Exact match
    		112
    130
    • HL_10456.1
    		HL_10456.1
    • Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F
    • History status: Exact match
    		172
    131
    • HL_53099.1
    		HL_53099.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		102
    132
    • HL_15574.1
    		HL_15574.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		72
    133
    • HL_29129.2
    		HL_29129.2
    • Basepair signature: cWW-tWH-F-F-F-F-F
    • History status: Exact match
    		92
    134
    • HL_43517.1
    		HL_43517.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • Mini UNCG (1)
    		• 52
    135
    • HL_76390.1
    		HL_76390.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • Mini UNCG related (1)
    		• 42
    136
    • HL_89346.1
    		HL_89346.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		152
    137
    • HL_10540.1
    		HL_10540.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		72
    138
    • HL_16398.1
    		HL_16398.1
    • Basepair signature: cWW-F-F-F-F-tSW-F
    • History status: Exact match
    		92
    139
    • HL_57863.1
    		HL_57863.1
    • Basepair signature: cWW-F-F-cWH-cWH-F
    • History status: Exact match
  • G-quadruplex fragment (2)
    		• 92
    140
    • HL_86012.1
    		HL_86012.1
    • Basepair signature: cWW-tWH-F-F-F-F
    • History status: Exact match
  • T-loop with unstacked turn (2)
    		• 82
    141
    • HL_62934.1
    		HL_62934.1
    • Basepair signature: cWW-tSH-F
    • History status: Exact match
    		52
    142
    • HL_10744.1
    		HL_10744.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		72
    143
    • HL_53504.3
    		HL_53504.3
    • Basepair signature: cWW-tSH-F-F-F-F-F-F
    • History status: Exact match
    		102
    144
    • HL_68257.1
    		HL_68257.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		102
    145
    • HL_73183.1
    		HL_73183.1
    • Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot geometry with G-bulge (2)
    		• 142
    146
    • HL_08510.1
    		HL_08510.1
    • Basepair signature: cWW-F-F-cSH-F-F
    • History status: Exact match
    		82
    147
    • HL_21248.1
    		HL_21248.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		112
    148
    • HL_12289.1
    		HL_12289.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
  • UNCG variation (1)
    		• 52
    149
    • HL_25847.1
    		HL_25847.1
    • Basepair signature: cWW-F-cSH-tHW-F-F-F
    • History status: Exact match
    		102
    150
    • HL_39243.1
    		HL_39243.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		62
    151
    • HL_04725.1
    		HL_04725.1
    • Basepair signature: cWW-cWS-cWW-cWW-cWS
    • History status: Exact match
    		82
    152
    • HL_45785.1
    		HL_45785.1
    • Basepair signature: cWW-F-F-F-F-cSH-F-F
    • History status: Exact match
    		102
    153
    • HL_08554.1
    		HL_08554.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		172
    154
    • HL_21372.1
    		HL_21372.1
    • Basepair signature: cWW-F-cSH-F-F
    • History status: Exact match
    		52
    155
    • HL_90620.1
    		HL_90620.1
    • Basepair signature: cWW-F-F-F-F-cSW-cSH-F
    • History status: Exact match
    		112
    156
    • HL_02581.1
    		HL_02581.1
    • Basepair signature: cWW-tSH-cWS-tSW-F-F-F
    • History status: Exact match
  • tRNA D-loop (2)
    		• 112
    157
    • HL_25967.1
    		HL_25967.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		62
    158
    • HL_04750.1
    		HL_04750.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		62
    159
    • HL_18565.1
    		HL_18565.1
    • Basepair signature: cWW-cWW-F-F-F-F
    • History status: Exact match
    		82
    160
    • HL_73255.1
    		HL_73255.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		62
    161
    • HL_36335.1
    		HL_36335.1
    • Basepair signature: cWW-F-F-cSS-cSS-F
    • History status: Exact match
    		92
    162
    • HL_50688.1
    		HL_50688.1
    • Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
    • History status: Exact match
    		142
    163
    • HL_64292.1
    		HL_64292.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		102
    164
    • HL_26631.1
    		HL_26631.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		52
    165
    • HL_55305.1
    		HL_55305.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		72
    166
    • HL_47732.1
    		HL_47732.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		82
    167
    • HL_59735.3
    		HL_59735.3
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		72
    168
    • HL_13189.1
    		HL_13189.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		42
    169
    • HL_70658.1
    		HL_70658.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		112
    170
    • HL_83808.3
    		HL_83808.3
    • Basepair signature: cWW-tWW-F-F-F
    • History status: Exact match
  • Pseudoknot (2)
    		• 72
    171
    • HL_60293.1
    		HL_60293.1
    • Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F
    • History status: Exact match
  • G-quadruplex (2)
    		• 152
    172
    • HL_37344.1
    		HL_37344.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		62
    173
    • HL_65472.1
    		HL_65472.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		72
    174
    • HL_80599.1
    		HL_80599.1
    • Basepair signature: cWW-F-F-F-F-F-F-F
    • History status: Exact match
    		92
    175
    • HL_13877.1
    		HL_13877.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		41
    176
    • HL_70751.1
    		HL_70751.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		111
    177
    • HL_47854.1
    		HL_47854.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		61
    178
    • HL_74292.1
    		HL_74292.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		101
    179
    • HL_84847.1
    		HL_84847.1
    • Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F
    • History status: Exact match
    		141
    180
    • HL_98252.1
    		HL_98252.1
    • Basepair signature: cWW-tWW-F-F-F-F
    • History status: Exact match
    		81
    181
    • HL_60914.1
    		HL_60914.1
    • Basepair signature: cWW-F
    • History status: Exact match
    		31
    182
    • HL_00317.1
    		HL_00317.1
    • Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		191
    183
    • HL_23010.1
    		HL_23010.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		81
    184
    • HL_52463.1
    		HL_52463.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		51
    185
    • HL_66482.1
    		HL_66482.1
    • Basepair signature: cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F
    • History status: Exact match
    		181
    186
    • HL_92488.1
    		HL_92488.1
    • Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F
    • History status: Exact match
    		131
    187
    • HL_14757.1
    		HL_14757.1
    • Basepair signature: cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F
    • History status: Exact match
    		171
    188
    • HL_28540.1
    		HL_28540.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		71
    189
    • HL_42545.1
    		HL_42545.1
    • Basepair signature: cWW-F-F-F-F-cSW-cSH-F
    • History status: Exact match
    		71
    190
    • HL_56500.1
    		HL_56500.1
    • Basepair signature: cWW-cWW-F-cSH-F-F
    • History status: Exact match
    		91
    191
    • HL_48914.1
    		HL_48914.1
    • Basepair signature: cWW-F-F-tHW-F-F-F
    • History status: New id, no parents
    		91
    192
    • HL_88558.1
    		HL_88558.1
    • Basepair signature: cWW-tSH-F-F-F-F-F-F-F
    • History status: Exact match
    		111
    193
    • HL_01255.1
    		HL_01255.1
    • Basepair signature: F-F-F-F-F-F-F-F
    • History status: Exact match
    		81
    194
    • HL_23509.1
    		HL_23509.1
    • Basepair signature: cSH-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		111
    195
    • HL_38046.1
    		HL_38046.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		81
    196
    • HL_93135.1
    		HL_93135.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
  • Pseudoknot (1)
    		• 81
    197
    • HL_15118.1
    		HL_15118.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		111
    198
    • HL_28791.1
    		HL_28791.1
    • Basepair signature: cWW-F-F-F-F
    • History status: Exact match
    		61
    199
    • HL_56845.1
    		HL_56845.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		141
    200
    • HL_85434.1
    		HL_85434.1
    • Basepair signature: cWW-cWW-F-F-F-F-F-F
    • History status: Exact match
    		101
    201
    • HL_33983.1
    		HL_33983.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		71
    202
    • HL_01508.1
    		HL_01508.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		121
    203
    • HL_71925.1
    		HL_71925.1
    • Basepair signature: F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		121
    204
    • HL_85993.1
    		HL_85993.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		71
    205
    • HL_99040.1
    		HL_99040.1
    • Basepair signature: F-F-F-F-F-F
    • History status: Exact match
    		61
    206
    • HL_07903.1
    		HL_07903.1
    • Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		131
    207
    • HL_20781.1
    		HL_20781.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		101
    208
    • HL_62041.1
    		HL_62041.1
    • Basepair signature: cWW-cWS
    • History status: Exact match
  • D-loop related (1)
    		• 41
    209
    • HL_04641.1
    		HL_04641.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		71
    210
    • HL_29762.1
    		HL_29762.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		71
    211
    • HL_72582.1
    		HL_72582.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		81
    212
    • HL_99748.1
    		HL_99748.1
    • Basepair signature: cWW-F-F-cSH
    • History status: Exact match
  • D-loop related (1)
    		• 61
    213
    • HL_35354.1
    		HL_35354.1
    • Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH
    • History status: Exact match
    		211
    214
    • HL_24792.1
    		HL_24792.1
    • Basepair signature: cWW-cWS-F-F-F
    • History status: Exact match
    		61
    215
    • HL_16991.1
    		HL_16991.1
    • Basepair signature: cWW-cWH-cWH-F-cWH-F
    • History status: Exact match
  • G-quadruplex fragment (1)
    		• 81
    216
    • HL_58224.1
    		HL_58224.1
    • Basepair signature: cWW-F-F-F-F-F
    • History status: Exact match
    		71
    217
    • HL_50318.1
    		HL_50318.1
    • Basepair signature: cWW-cSH-F-F
    • History status: Exact match
    		61
    218
    • HL_63355.1
    		HL_63355.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		131
    219
    • HL_02483.1
    		HL_02483.1
    • Basepair signature: cWW-tWH-F-cSH-F-F-F
    • History status: Exact match
    		101
    220
    • HL_68547.1
    		HL_68547.1
    • Basepair signature: cWW-F-F-tHS-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		181
    221
    • HL_18423.1
    		HL_18423.1
    • Basepair signature: cWW-tSH-tHS-F
    • History status: Exact match
    		71
    222
    • HL_58539.1
    		HL_58539.1
    • Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F
    • History status: Exact match
    		131
    223
    • HL_35941.1
    		HL_35941.1
    • Basepair signature: cWW-F
    • History status: Exact match
    		31
    224
    • HL_63801.1
    		HL_63801.1
    • Basepair signature: cWW-F-F-F-F
    • History status: New id, 1 parent
    		61
    225
    • HL_82820.1
    		HL_82820.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		51
    226
    • HL_30839.1
    		HL_30839.1
    • Basepair signature: F-F-F
    • History status: Exact match
    		31
    227
    • HL_59564.1
    		HL_59564.1
    • Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		201
    228
    • HL_08602.1
    		HL_08602.1
    • Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F
    • History status: Exact match
    		111
    229
    • HL_21400.1
    		HL_21400.1
    • Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH
    • History status: Exact match
  • G-quadruplex (1)
    		• 181
    230
    • HL_80362.1
    		HL_80362.1
    • Basepair signature: cWW-F-F-F
    • History status: Exact match
    		51
    231
    • HL_91270.1
    		HL_91270.1
    • Basepair signature: cWW-F-cWH-F
    • History status: Exact match
    		61
    232
    • HL_02811.1
    		HL_02811.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		41
    233
    • HL_12870.1
    		HL_12870.1
    • Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F
    • History status: Exact match
    		121
    234
    • HL_97733.1
    		HL_97733.1
    • Basepair signature: cWW-F-F-F-cSH-F
    • History status: Exact match
    		81
    235
    • HL_87463.1
    		HL_87463.1
    • Basepair signature: cWW-cWW-F-F-F-F-F
    • History status: Exact match
    		91
    236
    • HL_22135.1
    		HL_22135.1
    • Basepair signature: cWW-F-F
    • History status: Exact match
    		41
    237
    • HL_80411.1
    		HL_80411.1
    • Basepair signature: cWW-F-cSH-F-F-F-F
    • History status: Exact match
    		91
    238
    • HL_26934.1
    		HL_26934.1
    • Basepair signature: cWW-F-F-F-F-F-F
    • History status: Exact match
    		81
    239
    • HL_50851.1
    		HL_50851.1
    • Basepair signature: cWW-cWH-cWH-cWH-cWH-F
    • History status: Exact match
  • G-quadruplex fragment (1)
    		• 91
    240
    • HL_91641.1
    		HL_91641.1
    • Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F
    • History status: Exact match
    		161

    Coloring options:


    Exact match 227; Updated, 1 parent 8; New id, no parents 1; Updated, 2 parents 2; New id, 1 parent 2;

    Copyright 2025 BGSU RNA group. Page generated in 0.4878 s