Motif HL_75759.6 Version HL_75759.6 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4CUV_072 | 4CUV | 0.6036 | 0 | 1 | LSU rRNA | C | 3350 | U | 3351 | U | 3352 | G | 3353 | cWW | |
| 2 | HL_3U5F_007 | 3U5F | 0.3966 | 0 | 6 | SSU rRNA | C | 276 | U | 277 | U | 278 | G | 279 | cWW | |
| 3 | HL_2QBG_041 | 2QBG | 0.3510 | 0 | B | LSU rRNA | C | 1565 | A | 1566 | G | 1567 | G | 1568 | cWW | |
| 4 | HL_4NVV_037 | 4NVV | 0.3099 | 0 | A | LSU rRNA | C | 1612 | A | 1613 | A | 1614 | G | 1615 | cWW | |
| 5 | HL_4IOA_038 | 4IOA | 0.3453 | 0 | Mini UNCG (H) | X | LSU rRNA | C | 1581 | A | 1582 | A | 1583 | G | 1584 | cWW |
| 6 | HL_1S72_041 | 1S72 | 0.2164 | 1 | Mini UNCG (H) | 0 | LSU rRNA | C | 1651 | A | 1653 | U | 1654 | G | 1655 | cWW |
| 7 | HL_4A1B_039 | 4A1B | 0.2479 | 1 | 1 | LSU rRNA | C | 1818 | U | 1820 | U | 1821 | G | 1822 | cWW | |
| 8 | HL_3U5H_040 | 3U5H | 0.1446 | 1 | 5 | LSU rRNA | C | 1792 | G | 1794 | U | 1795 | G | 1796 | cWW | |
| 9 | HL_4CUV_040 | 4CUV | 0.0000 | 1 | 1 | LSU rRNA | C | 1792 | G | 1794 | U | 1795 | G | 1796 | cWW | |
| 10 | HL_4OO8_002 | 4OO8 | 0.2499 | 0 | B | tracrRNA | C | 55 | U | 56 | A | 57 | G | 58 | cWW | |
| 11 | HL_2F8K_001 | 2F8K | 0.3490 | 0 | Mini UNCG | B | RNA (16-mer) | U | 6 | U | 7 | G | 8 | A | 9 | cWW |
| 12 | HL_3U5H_072 | 3U5H | 0.6410 | 0 | 5 | LSU rRNA | C | 3350 | U | 3351 | U | 3352 | G | 3353 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUG | 3 |
| CAAG | 2 |
| CCGUG | 2 |
| CAGG | 1 |
| CCAUG | 1 |
| CCUUG | 1 |
| CUAG | 1 |
| UUGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU | 3 |
| AA | 2 |
| CGU | 2 |
| AG | 1 |
| CAU | 1 |
| CUU | 1 |
| UA | 1 |
| UG | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_75759.6 | Only in the parent motif |
|---|---|---|---|
| HL_75759.5 Compare | HL_4NVV_037, HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_4OO8_002, HL_2QBG_041, HL_2F8K_001, HL_3U5H_040, HL_4IOA_038, HL_3U5H_072 | HL_4CUV_072, HL_4CUV_040 |
Children motifs
| Child motif | Common motif instances | Only in HL_75759.6 | Only in the child motif |
|---|---|---|---|
| HL_75759.7 Compare | HL_4NVV_037, HL_1S72_041, HL_4CUV_072, HL_4A1B_039, HL_3U5F_007, HL_4CUV_040, HL_4OO8_002, HL_2QBG_041, HL_2F8K_001, HL_3U5H_040, HL_4IOA_038, HL_3U5H_072 | HL_4UN5_002, HL_1VX6_040, HL_4UN3_002, HL_1VWW_041 |
- Annotations
-
- (9)
- Mini UNCG (H) (2)
- Mini UNCG (1)
- Basepair signature
- cWW-R
- Heat map statistics
- Min 0.11 | Avg 0.42 | Max 0.80
Coloring options: