Motif HL_75768.1 Version HL_75768.1 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_219 | 4V88 | 0.9293 | 3 | A6 | SSU rRNA | A | 1550 | U | 1551 | U | 1552 | G | 1553 | U | 1554 | A | 1555 | A | 1556 | U | 1560 | U | 1561 | cWW | ncWH | tWH |
| 2 | HL_8C3A_224 | 8C3A | 0.9377 | 3 | CM | SSU rRNA | A | 1537 | U | 1538 | U | 1539 | G | 1540 | U | 1541 | A | 1542 | A | 1543 | U | 1547 | U | 1548 | cWW | ncWH | tWH |
| 3 | HL_8VM9_004 | 8VM9 | 0.7364 | 1 | R | RNA (85-MER) | G | 15 | G | 16 | U | 17 | A | 18 | C | 20 | C | 21 | C | 22 | A | 23 | C | 24 | cWW | cWW | |
| 4 | HL_8C3A_204 | 8C3A | 0.0000 | 0 | CM | SSU rRNA | C | 487 | C | 488 | C | 489 | U | 490 | U | 491 | U | 492 | U | 493 | G | 494 | G | 495 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUGUAAUUAUU | 1 |
| AUUGUAAUUGUU | 1 |
| GGUAUCCCAC | 1 |
| CCCUUUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGUAAUUAU | 1 |
| UUGUAAUUGU | 1 |
| GUAUCCCA | 1 |
| CCUUUUG | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.54 | Max 0.94
Coloring options: