Motif HL_75828.1 Version HL_75828.1 of this group appears in releases 3.86 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_220 | 4V88 | 0.0000 | 3 | A6 | SSU rRNA | G | 1594 | U | 1595 | U | 1598 | C | 1599 | A | 1600 | C | 1602 | cWW | ntWW | |
| 2 | HL_8C3A_225 | 8C3A | 0.2189 | 3 | CM | SSU rRNA | G | 1581 | U | 1582 | U | 1585 | C | 1586 | A | 1587 | C | 1589 | cWW | tWH | |
| 3 | HL_8X5V_002 | 8X5V | 0.6934 | 4 | B | RNA (110-mer) | G | 71 | U | 72 | G | 76 | G | 77 | A | 78 | C | 80 | cWW | tWH | |
| 4 | HL_1U9S_001 | 1U9S | 0.8029 | 1 | GNRA | A | RIBONUCLEASE P | G | 84 | U | 85 | A | 86 | A | 87 | C | 88 | C | 90 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCAUCAGC | 2 |
| GUUGGGGAUC | 1 |
| GUAACGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAUCAG | 2 |
| UUGGGGAU | 1 |
| UAACG | 1 |
- Annotations
-
- (3)
- GNRA (1)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.22 | Avg 0.46 | Max 0.81
Coloring options: