Motif HL_75828.1 Version HL_75828.1 of this group appears in releases 3.86 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4V88_220 | 4V88 | 0.0000 | 3 | A6 | G | 1594 | U | 1595 | U | 1598 | C | 1599 | A | 1600 | C | 1602 | cWW | ntWW | |
2 | HL_8C3A_225 | 8C3A | 0.2189 | 3 | CM | G | 1581 | U | 1582 | U | 1585 | C | 1586 | A | 1587 | C | 1589 | cWW | tWH | |
3 | HL_8X5V_002 | 8X5V | 0.6934 | 4 | B | G | 71 | U | 72 | G | 76 | G | 77 | A | 78 | C | 80 | cWW | tWH | |
4 | HL_1U9S_001 | 1U9S | 0.8029 | 1 | GNRA | A | G | 84 | U | 85 | A | 86 | A | 87 | C | 88 | C | 90 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUCAUCAGC | 2 |
GUUGGGGAUC | 1 |
GUAACGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UCAUCAG | 2 |
UUGGGGAU | 1 |
UAACG | 1 |
- Annotations
-
- (3)
- GNRA (1)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.22 | Avg 0.46 | Max 0.81
Coloring options: