Motif HL_75930.1 Version HL_75930.1 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_176 | 5J7L | 0.5111 | 1 | DA | LSU rRNA | C | 1728 | C | 1730 | G | 1731 | ncWW |
| 2 | HL_5TBW_068 | 5TBW | 0.5291 | 1 | 1 | LSU rRNA | C | 3194 | U | 3196 | G | 3197 | cWW |
| 3 | HL_8VM9_005 | 8VM9 | 0.4456 | 2 | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 34 | U | 36 | G | 38 | cWW |
| 4 | HL_5TBW_004 | 5TBW | 0.3564 | 2 | 1 | LSU rRNA | C | 132 | U | 134 | G | 136 | cWW |
| 5 | HL_8C3A_004 | 8C3A | 0.3494 | 2 | 1 | LSU rRNA | C | 131 | U | 133 | G | 135 | cWW |
| 6 | HL_8VM8_002 | 8VM8 | 0.3234 | 2 | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 39 | U | 41 | G | 43 | cWW |
| 7 | HL_2UWM_002 | 2UWM | 0.2670 | 1 | D | RNA (23-mer) | G | 22 | U | 24 | C | 25 | cWW |
| 8 | HL_6U8D_003 | 6U8D | 0.1645 | 1 | A | JIIIabc RNA (68-MER) | C | 232 | U | 234 | G | 235 | cWW |
| 9 | HL_2PJP_001 | 2PJP | 0.0000 | 1 | B | SECIS RNA | G | 22 | U | 24 | C | 25 | cWW |
| 10 | HL_6M0X_002 | 6M0X | 0.1474 | 1 | B | RNA (71-MER) | U | 56 | C | 58 | A | 59 | cWW |
| 11 | HL_4Z0C_002 | 4Z0C | 0.8896 | 5 | C | DNA (5'-R(P*AP*CP*GP*GP*AP*AP*AP*GP*AP*CP*CP*CP*C)-3') | G | 4 | A | 9 | C | 11 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUG | 2 |
| GGUC | 2 |
| CUCG | 1 |
| CUUG | 1 |
| CUUCG | 1 |
| CUUUG | 1 |
| CGUG | 1 |
| UUCA | 1 |
| GAAAGACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU | 3 |
| UC | 2 |
| AUU | 2 |
| UU | 1 |
| UUC | 1 |
| UUU | 1 |
| AAAGAC | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: